clean up Database/Accessor/Manager interaction, refine Mapper group maps
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@ -2,6 +2,7 @@
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__pycache__/
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.pytest_cache/
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localsys.egg-info/
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.ipynb_checkpoints/
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# vendor and build files
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dist/
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@ -6,7 +6,6 @@ co3/accessor.py
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co3/co3.py
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co3/collector.py
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co3/component.py
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co3/composer.py
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co3/database.py
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co3/engine.py
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co3/indexer.py
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@ -95,11 +95,11 @@ Note: Organization for inheritance over composition
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from co3.accessor import Accessor
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from co3.co3 import CO3, collate
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from co3.collector import Collector
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from co3.composer import Composer
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#from co3.composer import Composer
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from co3.database import Database
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from co3.indexer import Indexer
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from co3.manager import Manager
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from co3.mapper import Mapper
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from co3.mapper import Mapper, ComposableMapper
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from co3.component import Component
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from co3.schema import Schema
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from co3.engine import Engine
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@ -83,7 +83,8 @@ class RelationalAccessor[R: Relation](Accessor[R]):
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include_cols : bool = False,
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):
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res = self.select(
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relation, attributes, where, mappings, include_cols, limit=1)
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relation, attributes, where, mappings, include_cols, limit=1
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)
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if include_cols and len(res[0]) > 0:
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return res[0][0], res[1]
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@ -97,6 +98,7 @@ class RelationalAccessor[R: Relation](Accessor[R]):
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class SQLAccessor(RelationalAccessor[SQLTable]):
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def raw_select(
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self,
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connection,
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sql,
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bind_params=None,
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mappings=False,
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@ -110,7 +112,8 @@ class SQLAccessor(RelationalAccessor[SQLTable]):
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def select(
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self,
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table: SQLTable,
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connection,
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component: SQLTable,
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columns = None,
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where = None,
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distinct_on = None,
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@ -141,20 +144,21 @@ class SQLAccessor(RelationalAccessor[SQLTable]):
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if where is None:
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where = sa.true()
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stmt = sa.select(table).where(where)
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if cols is not None:
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stmt = sa.select(*cols).select_from(table).where(where)
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table = component.obj
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statement = sa.select(table).where(where)
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if columns is not None:
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statement = sa.select(*columns).select_from(table).where(where)
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if distinct_on is not None:
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stmt = stmt.group_by(distinct_on)
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statement = statement.group_by(distinct_on)
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if order_by is not None:
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stmt = stmt.order_by(order_by)
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statement = statement.order_by(order_by)
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if limit > 0:
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stmt = stmt.limit(limit)
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statement = statement.limit(limit)
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res = SQLEngine._execute(connection, statement, include_cols=include_cols)
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res = SQLEngine.execute(connection, statement, include_cols=include_cols)
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if mappings:
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return res.mappings().all()
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@ -7,13 +7,10 @@ abstractions within particular storage protocols.
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'''
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class Component[T]:
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def __init__(self, name, obj: T, schema: 'Schema'):
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def __init__(self, name, obj: T):
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self.name = name
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self.obj = obj
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self.schema = schema
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schema.add_component(self)
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def __str__(self):
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return f'<Component ({self.__class__.__name__})> {self.name}'
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@ -63,8 +63,12 @@ class Relation[T](ComposableComponent[T]):
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class SQLTable(Relation[SQLTableLike]):
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@classmethod
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def from_table(cls, table: sa.Table, schema: 'SQLSchema'):
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return cls(table.name, table, schema)
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def from_table(cls, table: sa.Table):
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'''
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Note that the sa.Table type is intentional here; not all matching types for
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SQLTableLike have a defined `name` property
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'''
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return cls(table.name, table)
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def get_attributes(self) -> tuple:
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return tuple(self.obj.columns)
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@ -102,7 +106,10 @@ class SQLTable(Relation[SQLTableLike]):
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return insert_dict
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def compose(self, _with: Self, on, outer=False):
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return self.obj.join(_with, on, isouter=outer)
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return self.__class__(
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f'{self.name}+{_with.name}',
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self.obj.join(_with.obj, on, isouter=outer)
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)
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# key-value stores
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class Dictionary(Relation[dict]):
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@ -55,10 +55,10 @@ Dev note: on explicit connection contexts
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import logging
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from co3.accessor import Accessor
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from co3.composer import Composer
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from co3.manager import Manager
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from co3.indexer import Indexer
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from co3.engine import Engine
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from co3.schema import Schema
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logger = logging.getLogger(__name__)
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@ -118,6 +118,12 @@ class Database[C: Component]:
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self._reset_cache = False
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def select(self, component: C, *args, **kwargs):
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'''
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Dev note: args and kwargs have to be general/unspecified here due to the possible
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passthrough method adopting arbitrary parameters in subtypes. I could simply
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overload this method in the relevant inheriting DBs (i.e., by matching the
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expected Accessor's .select signature).
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'''
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with self.engine.connect() as connection:
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return self.accessor.select(
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connection,
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@ -128,13 +134,16 @@ class Database[C: Component]:
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def insert(self, component: C, *args, **kwargs):
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with self.engine.connect() as connection:
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return self.accessor.insert(
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return self.manager.insert(
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connection,
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component,
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*args,
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**kwargs
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)
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def recreate(self, schema: Schema[C]):
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self.manager.recreate(schema, self.engine)
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@property
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def index(self):
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if self.reset_cache:
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@ -10,14 +10,13 @@ class SQLEngine(Engine):
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super().__init__(url, **kwargs)
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def _create_manager(self):
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return sa.create_engine(*self.manager_args, self.manager_kwargs)
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return sa.create_engine(*self._manager_args, **self._manager_kwargs)
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@contextmanager
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def connect(self, timeout=None):
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return self.manager.connect()
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@staticmethod
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def _execute(
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def execute(
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connection,
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statement,
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bind_params=None,
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@ -42,7 +41,7 @@ class SQLEngine(Engine):
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return res
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@staticmethod
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def _exec_explicit(connection, statement, bind_params=None):
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def exec_explicit(connection, statement, bind_params=None):
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trans = connection.begin() # start a new transaction explicitly
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try:
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result = connection.execute(statement, bind_params)
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@ -8,6 +8,7 @@ from pathlib import Path
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from abc import ABCMeta, abstractmethod
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from co3.schema import Schema
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from co3.engine import Engine
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class Manager[C: Component](metaclass=ABCMeta):
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@ -19,7 +20,7 @@ class Manager[C: Component](metaclass=ABCMeta):
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wrapped up in this class to then also be mirrored for the FTS counterparts.
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'''
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@abstractmethod
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def recreate(self, schema: Schema[C]):
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def recreate(self, schema: Schema[C], engine: Engine):
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raise NotImplementedError
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@abstractmethod
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@ -49,6 +49,7 @@ from tqdm.auto import tqdm
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from co3 import util
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from co3.schema import Schema
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from co3.engines import SQLEngine
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from co3.manager import Manager
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from co3.components import Relation, SQLTable
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@ -76,12 +77,17 @@ class SQLManager(RelationalManager[SQLTable]):
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from an attached collector.
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'''
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def __init__(self, *args, **kwargs):
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'''
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The insert lock is a _reentrant lock_, meaning the same thread can acquire the
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lock again with out deadlocking (simplifying across methods of this class that
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need it).
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'''
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super().__init__(*args, **kwargs)
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self.routers = []
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self._router = None
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self._insert_lock = threading.Lock()
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self._insert_lock = threading.RLock()
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@property
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def router(self):
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@ -92,18 +98,42 @@ class SQLManager(RelationalManager[SQLTable]):
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def add_router(self, router):
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self.routers.append(router)
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def recreate(self, schema: Schema[SQLTable]):
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schema.metadata.drop_all(self.engine)
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schema.metadata.create_all(self.engine, checkfirst=True)
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def recreate(self, schema: Schema[SQLTable], engine: SQLEngine):
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'''
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Ideally this remains open, as we can't necessarily rely on a SQLAlchemy metadata
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object for all kinds of SQLDatabases (would depend on the backend, for instance).
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Haven't quite nailed down how backend instances should be determined; something
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like SQLAlchemySQLManager doesn't seem great. Nevertheless, this method likely
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cannot be generalized at the "SQL" (general) level.
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'''
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metadata = next(iter(schema._component_set)).obj.metadata
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metadata.drop_all(engine.manager)
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metadata.create_all(engine.manager, checkfirst=True)
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def update(self): pass
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def insert(self, inserts: dict):
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def insert(
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self,
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connection,
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component,
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inserts: list[dict],
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):
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'''
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Parameters:
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'''
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with self._insert_lock:
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connection.execute(
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sa.insert(component.obj),
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inserts
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)
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def insert_many(self, connection, inserts: dict):
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'''
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Perform provided table inserts.
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Parameters:
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inserts: table-indexed dictionary of insert lists
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inserts: component-indexed dictionary of insert lists
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'''
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total_inserts = sum([len(ilist) for ilist in inserts.values()])
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if total_inserts < 1: return
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@ -112,24 +142,18 @@ class SQLManager(RelationalManager[SQLTable]):
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# TODO: add some exception handling? may be fine w default propagation
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start = time.time()
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with self.engine.connect() as connection:
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with self._insert_lock:
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for table_str in inserts:
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table_inserts = inserts[table_str]
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if len(table_inserts) == 0: continue
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with self._insert_lock:
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for component in inserts:
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comp_inserts = inserts[component]
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if len(comp_inserts) == 0: continue
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table = tables.table_map[table_str]
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logger.info(
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f'Inserting {len(comp_inserts)} out-of-date entries into component "{component}"'
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)
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logger.info(
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f'Inserting {len(table_inserts)} out-of-date entries into table "{table_str}"'
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)
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connection.execute(
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sa.insert(table),
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table_inserts
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)
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connection.commit()
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logger.info(f'Insert transaction completed successfully in {time.time()-start:.2f}s')
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self.insert(connection, component, comp_inserts)
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connection.commit()
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logger.info(f'Insert transaction completed successfully in {time.time()-start:.2f}s')
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def _file_sync_bools(self):
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synced_bools = []
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@ -29,7 +29,7 @@ Development log:
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hierarchy). As such, to fully collect from a type, the Mapper needs to leave
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registration open to various types, not just those part of the same hierarchy.
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'''
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from typing import Callable
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from typing import Callable, Any
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from collections import defaultdict
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from co3.co3 import CO3
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@ -55,12 +55,14 @@ class Mapper[C: Component]:
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"dropped off" at an appropriate Database's Manager to actually perform the requested
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inserts (hence why we tie Mappers to Schemas one-to-one).
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Dev note: the Composer needs reconsideration, or at least its positioning directly in
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this class. It may be more appropriate to have at the Schema level, or even just
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dissolved altogether if arbitrary named Components can be attached to schemas.
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'''
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type comp_spec = str | C
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Dev note:
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the Composer needs reconsideration, or at least its positioning directly in this
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class. It may be more appropriate to have at the Schema level, or even just
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dissolved altogether if arbitrary named Components can be attached to schemas.
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- Consider pushing this into a Mapper factory; on init, could check if provided
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Schema wraps up composable Components or not
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'''
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_collector_cls: type[Collector[C]] = Collector[C]
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def __init__(self, schema: Schema[C]):
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@ -76,7 +78,7 @@ class Mapper[C: Component]:
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self.attribute_comps: dict[type[CO3], C] = {}
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self.collation_groups: dict[type[CO3], dict[str|None, C]] = defaultdict(dict)
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def _check_component(self, comp: self.comp_spec):
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def _check_component(self, comp: str | C):
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if type(comp) is str:
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comp_key = comp
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comp = self.schema.get_component(comp_key)
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@ -95,9 +97,9 @@ class Mapper[C: Component]:
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def attach(
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self,
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type_ref : type[CO3],
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attr_comp : self.comp_spec,
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coll_comp : self.comp_spec | None = None,
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coll_groups : dict[str | None, self.comp_spec] | None = None,
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attr_comp : str | C,
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coll_comp : str | C | None = None,
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coll_groups : dict[str | None, str | C] | None = None,
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) -> None:
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'''
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Parameters:
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@ -127,8 +129,8 @@ class Mapper[C: Component]:
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def attach_many(
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self,
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type_list: list[type[CO3]],
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attr_name_map: Callable[[type[CO3]], self.comp_spec],
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coll_name_map: Callable[[type[CO3], str], self.comp_spec] | None = None,
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attr_name_map: Callable[[type[CO3]], str | C],
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coll_name_map: Callable[[type[CO3], str], str | C] | None = None,
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):
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'''
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Auto-register a set of types to the Mapper's attached Schema. Associations are
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@ -218,7 +220,7 @@ class Mapper[C: Component]:
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_, action_groups = obj.action_registry[action_key]
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for action_group in action_groups:
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collation_component, _ = self.get_collation_comp(_cls, group=action_group)
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collation_component = self.get_collation_comp(_cls, group=action_group)
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if collation_component is None:
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continue
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@ -317,8 +319,8 @@ class ComposableMapper[C: ComposableComponent](Mapper[C]):
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def __init__(
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self,
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schema : Schema[C],
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attr_compose_map : Callable[[self.comp_spec, self.comp_spec], Any] | None = None
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coll_compose_map : Callable[[self.comp_spec, self.comp_spec], Any] | None = None
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attr_compose_map : Callable[[str | C, str | C], Any] | None = None,
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coll_compose_map : Callable[[str | C, str | C], Any] | None = None,
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):
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super().__init__(schema)
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@ -328,7 +330,7 @@ class ComposableMapper[C: ComposableComponent](Mapper[C]):
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def compose(
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self,
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obj: CO3,
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action_groups: list[str] = None,
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action_groups: list[str] | None = None,
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*compose_args,
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**compose_kwargs,
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):
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@ -356,29 +358,36 @@ class ComposableMapper[C: ComposableComponent](Mapper[C]):
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# compose horizontally with components from provided action groups
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coll_comp_agg = attr_comp
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for action_group in action_groups:
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coll_comp = self.get_collation_comp(_cls, group=action_group)
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if action_groups is not None:
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for action_group in action_groups:
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coll_comp = self.get_collation_comp(_cls, group=action_group)
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if coll_comp is None:
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continue
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if coll_comp is None:
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continue
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compose_condition = self.coll_compose_map(coll_comp_agg, coll_comp)
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# note how the join condition is specified using the non-composite
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# `attr_comp` and new `coll_comp`; the composite doesn't typically
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# have the same attribute access and needs a ref to a specific comp
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compose_condition = self.coll_compose_map(attr_comp, coll_comp)
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coll_comp_agg = coll_comp_agg.compose(
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component=coll_comp,
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on=compose_condition,
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coll_comp_agg = coll_comp_agg.compose(
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coll_comp,
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compose_condition,
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*compose_args,
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**compose_kwargs,
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)
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if attr_comp_agg is None:
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attr_comp_agg = coll_comp_agg
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else:
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# note the reduced attr_comp ref passed to compose map, rather than
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# coll_comp_agg produced above; this is provided as the compose comp, though
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compose_condition = self.attr_compose_map(attr_comp_agg, attr_comp)
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attr_comp_agg = attr_comp_agg.compose(
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coll_comp_agg,
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compose_condition,
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*compose_args,
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**compose_kwargs,
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)
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# note the reduced attr_comp ref passed to compose map, rather than
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# coll_comp_agg produced above; this is provided as the compose comp, though
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compose_condition = self.attr_compose_map(attr_comp_agg, attr_comp)
|
||||
attr_comp_agg = attr_comp_agg.compose(
|
||||
component=coll_comp_agg,
|
||||
on=compose_condition,
|
||||
*compose_args,
|
||||
**compose_kwargs,
|
||||
)
|
||||
|
||||
return attr_comp_agg
|
||||
|
||||
@ -15,7 +15,8 @@ class SQLSchema(RelationalSchema[SQLTable]):
|
||||
instance = cls()
|
||||
|
||||
for table in metadata.tables.values():
|
||||
SQLTable.from_table(table, instance)
|
||||
comp = SQLTable.from_table(table)
|
||||
instance.add_component(comp)
|
||||
|
||||
return instance
|
||||
|
||||
|
||||
@ -1,6 +1,204 @@
|
||||
{
|
||||
"cells": [],
|
||||
"metadata": {},
|
||||
"cells": [
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 1,
|
||||
"id": "6f6fbc7e-4fb9-4353-b2ee-9ea819a3c896",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"name": "stderr",
|
||||
"output_type": "stream",
|
||||
"text": [
|
||||
"/home/smgr/.pyenv/versions/co4/lib/python3.12/site-packages/tqdm/auto.py:21: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html\n",
|
||||
" from .autonotebook import tqdm as notebook_tqdm\n"
|
||||
]
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"import vegetables"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 2,
|
||||
"id": "88fd0ea8-9c94-4569-a51b-823a04f32f55",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"{'age': 3}"
|
||||
]
|
||||
},
|
||||
"execution_count": 2,
|
||||
"metadata": {},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"tomato = vegetables.Tomato('t1', 5)\n",
|
||||
"\n",
|
||||
"# test a register collation action\n",
|
||||
"tomato.collate('ripe')"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 3,
|
||||
"id": "348926d9-7137-4eff-a919-508788553dd2",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"['afff61ec-e0b0-44bb-9f0d-06008a82f6a5',\n",
|
||||
" '5edfa13c-0eb1-4bbc-b55e-1550ff7df3d2',\n",
|
||||
" '4568a2d4-eb41-4b15-9a29-e3e22906c661']"
|
||||
]
|
||||
},
|
||||
"execution_count": 3,
|
||||
"metadata": {},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"vegetables.vegetable_mapper.collect(tomato, ['ripe'])"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 4,
|
||||
"id": "4e5e7319-11bf-4051-951b-08c84e9f3874",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"<Component (SQLTable)> vegetable+tomato+tomato_aging_states+tomato_cooking_states"
|
||||
]
|
||||
},
|
||||
"execution_count": 4,
|
||||
"metadata": {},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"vegetables.vegetable_mapper.compose(tomato, action_groups=['aging', 'cooking'])"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 5,
|
||||
"id": "aa290686-8074-4038-a3cc-ce6817844653",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"[Column('id', Integer(), table=<vegetable>, primary_key=True, nullable=False),\n",
|
||||
" Column('name', String(), table=<vegetable>),\n",
|
||||
" Column('color', String(), table=<vegetable>),\n",
|
||||
" Column('id', Integer(), table=<tomato>, primary_key=True, nullable=False),\n",
|
||||
" Column('name', String(), ForeignKey('vegetable.name'), table=<tomato>),\n",
|
||||
" Column('radius', Integer(), table=<tomato>),\n",
|
||||
" Column('id', Integer(), table=<tomato_aging_states>, primary_key=True, nullable=False),\n",
|
||||
" Column('name', String(), ForeignKey('tomato.name'), table=<tomato_aging_states>),\n",
|
||||
" Column('state', String(), table=<tomato_aging_states>),\n",
|
||||
" Column('age', Integer(), table=<tomato_aging_states>)]"
|
||||
]
|
||||
},
|
||||
"execution_count": 5,
|
||||
"metadata": {},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"list(vegetables.vegetable_mapper.compose(tomato, action_groups=['aging']).obj.columns)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 6,
|
||||
"id": "f3c7e37d-ba9e-4bae-ae44-adc922bf5f4c",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"(vegetables.Tomato, vegetables.Vegetable, co3.co3.CO3, object)"
|
||||
]
|
||||
},
|
||||
"execution_count": 6,
|
||||
"metadata": {},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"tomato.__class__.__mro__"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 7,
|
||||
"id": "c21d2c54-39e2-4de3-93bc-763896ed348e",
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from co3.databases import SQLDatabase\n",
|
||||
"\n",
|
||||
"db = SQLDatabase('sqlite://', echo=True)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 8,
|
||||
"id": "a785d202-99d3-4ae7-859e-ee22b481f8df",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"<contextlib._GeneratorContextManager at 0x7dd5c619be60>"
|
||||
]
|
||||
},
|
||||
"execution_count": 8,
|
||||
"metadata": {},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"db.recreate(vegetable_schema) "
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"id": "cda01cb0-1666-4cb1-aa64-bcdca871aff5",
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": []
|
||||
}
|
||||
],
|
||||
"metadata": {
|
||||
"kernelspec": {
|
||||
"display_name": "co3",
|
||||
"language": "python",
|
||||
"name": "co3"
|
||||
},
|
||||
"language_info": {
|
||||
"codemirror_mode": {
|
||||
"name": "ipython",
|
||||
"version": 3
|
||||
},
|
||||
"file_extension": ".py",
|
||||
"mimetype": "text/x-python",
|
||||
"name": "python",
|
||||
"nbconvert_exporter": "python",
|
||||
"pygments_lexer": "ipython3",
|
||||
"version": "3.12.2"
|
||||
}
|
||||
},
|
||||
"nbformat": 4,
|
||||
"nbformat_minor": 5
|
||||
}
|
||||
|
||||
@ -6,7 +6,7 @@ import random
|
||||
import sqlalchemy as sa
|
||||
|
||||
from co3.schemas import SQLSchema
|
||||
from co3 import CO3, collate, Mapper
|
||||
from co3 import CO3, collate, Mapper, ComposableMapper
|
||||
from co3 import util
|
||||
|
||||
|
||||
@ -101,5 +101,35 @@ tomato_cooking_table = sa.Table(
|
||||
sa.Column('pieces', sa.Integer),
|
||||
)
|
||||
vegetable_schema = SQLSchema.from_metadata(metadata)
|
||||
vegetable_mapper = Mapper(vegetable_schema)
|
||||
|
||||
def general_compose_map(c1, c2):
|
||||
return c1.obj.c.name == c2.obj.c.name
|
||||
|
||||
vegetable_mapper = ComposableMapper(
|
||||
vegetable_schema,
|
||||
attr_compose_map=general_compose_map,
|
||||
coll_compose_map=general_compose_map,
|
||||
)
|
||||
|
||||
def attr_name_map(cls):
|
||||
return f'{cls.__name__.lower()}'
|
||||
|
||||
def coll_name_map(cls, action_group):
|
||||
return f'{cls.__name__.lower()}_{action_group}_states'
|
||||
|
||||
vegetable_mapper.attach_many(
|
||||
type_list,
|
||||
attr_name_map,
|
||||
coll_name_map,
|
||||
)
|
||||
|
||||
'''
|
||||
new mapping type for Mapper attachment:
|
||||
|
||||
Callable[ [type[CO3], str|None], tuple[str, tuple[str], tuple[str]]]
|
||||
|
||||
tail tuples to associate column names from central table to collation
|
||||
|
||||
this should complete the auto-compose horizontally
|
||||
'''
|
||||
|
||||
|
||||
@ -21,16 +21,388 @@
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"execution_count": 2,
|
||||
"id": "88fd0ea8-9c94-4569-a51b-823a04f32f55",
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"outputs": [
|
||||
{
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"{'age': 5}"
|
||||
]
|
||||
},
|
||||
"execution_count": 2,
|
||||
"metadata": {},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"tomato = vegetables.Tomato('t1', 5)\n",
|
||||
"\n",
|
||||
"# test a register collation action\n",
|
||||
"tomato.collate('ripe')"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 3,
|
||||
"id": "348926d9-7137-4eff-a919-508788553dd2",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"['9ca6772e-6621-4511-a4a6-ad451a1da91f',\n",
|
||||
" '2a91b423-4e08-491c-b1d2-5ec25259191e',\n",
|
||||
" '4a9edb2b-4ac5-467e-82ef-b254829ac2a2']"
|
||||
]
|
||||
},
|
||||
"execution_count": 3,
|
||||
"metadata": {},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"vegetables.vegetable_mapper.collect(tomato, ['ripe'])"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 4,
|
||||
"id": "4e5e7319-11bf-4051-951b-08c84e9f3874",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"<Component (SQLTable)> vegetable+tomato+tomato_aging_states+tomato_cooking_states"
|
||||
]
|
||||
},
|
||||
"execution_count": 4,
|
||||
"metadata": {},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"vegetables.vegetable_mapper.compose(tomato, action_groups=['aging', 'cooking'])"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 5,
|
||||
"id": "aa290686-8074-4038-a3cc-ce6817844653",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"[Column('id', Integer(), table=<vegetable>, primary_key=True, nullable=False),\n",
|
||||
" Column('name', String(), table=<vegetable>),\n",
|
||||
" Column('color', String(), table=<vegetable>),\n",
|
||||
" Column('id', Integer(), table=<tomato>, primary_key=True, nullable=False),\n",
|
||||
" Column('name', String(), ForeignKey('vegetable.name'), table=<tomato>),\n",
|
||||
" Column('radius', Integer(), table=<tomato>),\n",
|
||||
" Column('id', Integer(), table=<tomato_aging_states>, primary_key=True, nullable=False),\n",
|
||||
" Column('name', String(), ForeignKey('tomato.name'), table=<tomato_aging_states>),\n",
|
||||
" Column('state', String(), table=<tomato_aging_states>),\n",
|
||||
" Column('age', Integer(), table=<tomato_aging_states>)]"
|
||||
]
|
||||
},
|
||||
"execution_count": 5,
|
||||
"metadata": {},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"list(vegetables.vegetable_mapper.compose(tomato, action_groups=['aging']).obj.columns)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 6,
|
||||
"id": "f3c7e37d-ba9e-4bae-ae44-adc922bf5f4c",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"(vegetables.Tomato, vegetables.Vegetable, co3.co3.CO3, object)"
|
||||
]
|
||||
},
|
||||
"execution_count": 6,
|
||||
"metadata": {},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"tomato.__class__.__mro__"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 7,
|
||||
"id": "c21d2c54-39e2-4de3-93bc-763896ed348e",
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from co3.databases import SQLDatabase\n",
|
||||
"\n",
|
||||
"db = SQLDatabase('sqlite://') #, echo=True)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 8,
|
||||
"id": "a785d202-99d3-4ae7-859e-ee22b481f8df",
|
||||
"metadata": {
|
||||
"scrolled": true
|
||||
},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"db.recreate(vegetables.vegetable_schema)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 9,
|
||||
"id": "cda01cb0-1666-4cb1-aa64-bcdca871aff5",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"{<Component (SQLTable)> vegetable: [{'name': 't1', 'color': 'red'}],\n",
|
||||
" <Component (SQLTable)> tomato: [{'name': 't1', 'radius': 5}],\n",
|
||||
" <Component (SQLTable)> tomato_aging_states: [{'name': 't1',\n",
|
||||
" 'state': 'ripe',\n",
|
||||
" 'age': 2}]}"
|
||||
]
|
||||
},
|
||||
"execution_count": 9,
|
||||
"metadata": {},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"vegetables.vegetable_mapper.collector.inserts"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 10,
|
||||
"id": "af7124ed-3031-4f28-89a6-553eb5b3cc7a",
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"with db.engine.connect() as connection:\n",
|
||||
" db.manager.insert_many(\n",
|
||||
" connection, \n",
|
||||
" vegetables.vegetable_mapper.collector.inserts,\n",
|
||||
" )"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 11,
|
||||
"id": "0149e14e-5d07-42af-847d-af5c190f8946",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"name": "stdout",
|
||||
"output_type": "stream",
|
||||
"text": [
|
||||
"[{'id': 1, 'name': 't1', 'radius': 5}]\n"
|
||||
]
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"with db.engine.connect() as connection:\n",
|
||||
" print(db.accessor.select(\n",
|
||||
" connection, \n",
|
||||
" vegetables.vegetable_schema.get_component('tomato')\n",
|
||||
" ))"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 32,
|
||||
"id": "668d1b8c-b47f-4a58-914d-e43402443fe6",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"name": "stdout",
|
||||
"output_type": "stream",
|
||||
"text": [
|
||||
"[{'id': 1, 'name': 't1', 'color': 'red', 'id_1': 1, 'name_1': 't1', 'radius': 5}]\n"
|
||||
]
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"agg_table = vegetables.vegetable_mapper.compose(tomato)\n",
|
||||
"\n",
|
||||
"with db.engine.connect() as connection:\n",
|
||||
" agg_res = db.accessor.select(\n",
|
||||
" connection, \n",
|
||||
" agg_table,\n",
|
||||
" mappings=True,\n",
|
||||
" )\n",
|
||||
"\n",
|
||||
"print(agg_res)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 33,
|
||||
"id": "a051d72d-a867-46dc-bb5e-69341f39a056",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"name": "stdout",
|
||||
"output_type": "stream",
|
||||
"text": [
|
||||
"[{'id': 1, 'name': 't1', 'color': 'red', 'id_1': 1, 'name_1': 't1', 'radius': 5, 'id_2': 1, 'name_2': 't1', 'state': 'ripe', 'age': 2}]\n"
|
||||
]
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"agg_table = vegetables.vegetable_mapper.compose(tomato, action_groups=['aging'])#, outer=True)\n",
|
||||
"\n",
|
||||
"with db.engine.connect() as connection:\n",
|
||||
" agg_res = db.accessor.select(\n",
|
||||
" connection, \n",
|
||||
" agg_table,\n",
|
||||
" mappings=True,\n",
|
||||
" )\n",
|
||||
"\n",
|
||||
"print(agg_res)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 31,
|
||||
"id": "6a80cfd7-3175-4526-96e0-374765d64a27",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"sqlalchemy.engine.row.RowMapping"
|
||||
]
|
||||
},
|
||||
"execution_count": 31,
|
||||
"metadata": {},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"type(agg_res[0])"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 15,
|
||||
"id": "7cf05ddd-2328-4051-9cf8-4ac01352405e",
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"import sqlalchemy as sa\n",
|
||||
"from co3.engines import SQLEngine\n",
|
||||
"\n",
|
||||
"a = SQLEngine.execute(db.engine.connect(), sa.select(agg_table.obj))"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 19,
|
||||
"id": "c1edf68e-1fde-4a1f-8ec3-084713a8da45",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"[]"
|
||||
]
|
||||
},
|
||||
"execution_count": 19,
|
||||
"metadata": {},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"a.mappings().all()\n"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 37,
|
||||
"id": "8b8a9e47-7f5f-4828-a99e-5d9a12697f46",
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"tomato2 = vegetables.Tomato('t2', 8)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 38,
|
||||
"id": "062aa4de-7aea-4fd3-b5db-82af147d023e",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"ename": "AttributeError",
|
||||
"evalue": "'Tomato' object has no attribute 'action_map'",
|
||||
"output_type": "error",
|
||||
"traceback": [
|
||||
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
|
||||
"\u001b[0;31mAttributeError\u001b[0m Traceback (most recent call last)",
|
||||
"Cell \u001b[0;32mIn[38], line 1\u001b[0m\n\u001b[0;32m----> 1\u001b[0m \u001b[43mvegetables\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mvegetable_mapper\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mcollect\u001b[49m\u001b[43m(\u001b[49m\u001b[43mtomato2\u001b[49m\u001b[43m)\u001b[49m\n",
|
||||
"File \u001b[0;32m~/Documents/projects/ontolog/co3/build/__editable__.co3-0.1.1-py3-none-any/co3/mapper.py:198\u001b[0m, in \u001b[0;36mMapper.collect\u001b[0;34m(self, obj, action_keys, action_groups)\u001b[0m\n\u001b[1;32m 179\u001b[0m \u001b[38;5;250m\u001b[39m\u001b[38;5;124;03m'''\u001b[39;00m\n\u001b[1;32m 180\u001b[0m \u001b[38;5;124;03mStages inserts up the inheritance chain, and down through components.\u001b[39;00m\n\u001b[1;32m 181\u001b[0m \n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 195\u001b[0m \u001b[38;5;124;03mReturns: dict with keys and values relevant for associated SQLite tables\u001b[39;00m\n\u001b[1;32m 196\u001b[0m \u001b[38;5;124;03m'''\u001b[39;00m\n\u001b[1;32m 197\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m action_keys \u001b[38;5;129;01mis\u001b[39;00m \u001b[38;5;28;01mNone\u001b[39;00m:\n\u001b[0;32m--> 198\u001b[0m action_keys \u001b[38;5;241m=\u001b[39m \u001b[38;5;28mlist\u001b[39m(\u001b[43mobj\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43maction_map\u001b[49m\u001b[38;5;241m.\u001b[39mkeys())\n\u001b[1;32m 200\u001b[0m receipts \u001b[38;5;241m=\u001b[39m []\n\u001b[1;32m 201\u001b[0m \u001b[38;5;28;01mfor\u001b[39;00m _cls \u001b[38;5;129;01min\u001b[39;00m \u001b[38;5;28mreversed\u001b[39m(obj\u001b[38;5;241m.\u001b[39m\u001b[38;5;18m__class__\u001b[39m\u001b[38;5;241m.\u001b[39m\u001b[38;5;18m__mro__\u001b[39m[:\u001b[38;5;241m-\u001b[39m\u001b[38;5;241m2\u001b[39m]):\n",
|
||||
"\u001b[0;31mAttributeError\u001b[0m: 'Tomato' object has no attribute 'action_map'"
|
||||
]
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"vegetables.vegetable_mapper.collect(tomato2)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"id": "4673ddc8-3f76-4d8c-8186-bbed4a682e0d",
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"db.insert(vegetables.vegetable_schema.get_component('tomato'), "
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 36,
|
||||
"id": "9314be4e-c1d5-4af8-ad23-0b208d24b3eb",
|
||||
"metadata": {},
|
||||
"outputs": [
|
||||
{
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"[{'id': 1, 'name': 't1', 'radius': 5}]"
|
||||
]
|
||||
},
|
||||
"execution_count": 36,
|
||||
"metadata": {},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"db.select(vegetables.vegetable_schema.get_component('tomato'))"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"id": "a2efd060-f298-4ca6-8a58-7ed5acf1dd15",
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": []
|
||||
}
|
||||
],
|
||||
"metadata": {
|
||||
|
||||
@ -6,7 +6,7 @@ import random
|
||||
import sqlalchemy as sa
|
||||
|
||||
from co3.schemas import SQLSchema
|
||||
from co3 import CO3, collate, Mapper
|
||||
from co3 import CO3, collate, Mapper, ComposableMapper
|
||||
from co3 import util
|
||||
|
||||
|
||||
@ -101,7 +101,15 @@ tomato_cooking_table = sa.Table(
|
||||
sa.Column('pieces', sa.Integer),
|
||||
)
|
||||
vegetable_schema = SQLSchema.from_metadata(metadata)
|
||||
vegetable_mapper = Mapper(vegetable_schema)
|
||||
|
||||
def general_compose_map(c1, c2):
|
||||
return c1.obj.c.name == c2.obj.c.name
|
||||
|
||||
vegetable_mapper = ComposableMapper(
|
||||
vegetable_schema,
|
||||
attr_compose_map=general_compose_map,
|
||||
coll_compose_map=general_compose_map,
|
||||
)
|
||||
|
||||
def attr_name_map(cls):
|
||||
return f'{cls.__name__.lower()}'
|
||||
|
||||
@ -1,7 +1,6 @@
|
||||
from co3 import Accessor
|
||||
from co3 import CO3
|
||||
from co3 import Collector
|
||||
from co3 import Composer
|
||||
from co3 import Database
|
||||
from co3 import Indexer
|
||||
from co3 import Manager
|
||||
|
||||
Loading…
Reference in New Issue
Block a user