refactor Trainer (large), improve dataset/est middleware
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102
trainlib/dataloader.py
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102
trainlib/dataloader.py
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"""
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This class took me a long time to really settle into. It's a connector, and it
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feels redundant in many ways, so I've nearly deleted it several times while
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talking through the design. But in total, I think it serves a clear purpose.
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Reasons:
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- Need a typed dataloader, even if I know the type of my attached transform
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- Need a new scope that uses the same base dataset without interfering with the
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transform attribute; a design that sets or relies on that is subject to
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conflict
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- Why not just use vanilla DataLoaders?
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I'd like to, but the two reasons above make it clear why this is challenging:
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I don't get static checks on the structures returned during iteration, and
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while you can control ad hoc data transforms via dataset ``post_transforms``,
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things can get messy if you need to do that for many transforms using the
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same dataset (without copying). Simplest way around this is just a new scope
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with the same underlying dataset instance and a transform wrapper around the
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iterator; no interference with object attributes.
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This is really just meant as the minimum viable logic needed to accomplish the
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above - it's a very lightweight wrapper on the base ``DataLoader`` object.
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There's an explicit type upper bound ``Kw: EstimatorKwargs``, but it is
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otherwise a completely general transform over dataloader batches, highlighting
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that it's *mostly* here to place nice with type checks.
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"""
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from typing import Unpack
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from collections.abc import Iterator
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from torch.utils.data import DataLoader
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from trainlib.dataset import BatchedDataset
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from trainlib.estimator import EstimatorKwargs
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from trainlib.utils.type import LoaderKwargs
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class EstimatorDataLoader[B, Kw: EstimatorKwargs]:
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"""
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Data loaders for estimators.
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This class exists to connect batched data from datasets to the expected
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representation for estimator methods. Datasets may be developed
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independently from a given model structures, and models should be trainable
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under any such data. We need a way to ensure the batched groups of items we
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get from dataloaders match on a type level, i.e., can be reshaped into the
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expected ``Kw`` signature.
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Note: batch structure ``B`` cannot be directly inferred from type variables
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exposed by ``BatchedDatasets`` (namely ``R`` and ``I``). What's returned by
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a data loader wrapping any such dataset can be arbitrary (depending on the
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``collate_fn``), with default behavior being fairly consistent under nested
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collections but challenging to accurately type.
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.. todo::
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To log (have changed for Trainer):
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- New compact eval pipeline for train/val/auxiliary dataloaders.
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Somewhat annoying logic, but handled consistently
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- Convergence tracker will dynamically use training loss (early
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stopping) when a validation set isn't provided. Same mechanics for
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stagnant epochs (although early stopping is generally a little more
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nuanced, having a rate-based stopper, b/c train loss generally quite
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monotonic). So that's to be updated, plus room for possible model
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selection strategies later.
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- Logging happens at each batch, but we append to an epoch-indexed list
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and later average. There was a bug in the last round of testing that
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I didn't pick up where I was just overwriting summaries using the
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last seen batch.
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- Reworked general dataset/dataloader handling for main train loop, now
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accepting objects of this class to bridge estimator and dataset
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communication. This cleans up the batch mapping model.
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- TODO: implement a version of this that canonically works with the
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device passing plus EstimatorKwargs input; this is the last fuzzy bit
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I think.
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"""
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def __init__(
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self,
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dataset: BatchedDataset,
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**dataloader_kwargs: Unpack[LoaderKwargs],
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) -> None:
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self._dataloader = DataLoader(dataset, **dataloader_kwargs)
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def batch_to_est_kwargs(self, batch_data: B) -> Kw:
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"""
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.. note::
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Even if we have a concrete shape for the output kwarg dict for base
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estimators (requiring a tensor "inputs" attribute), we don't
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presuppose how a given batch object will map into this dict
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structure.
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return EstimatorKwargs({"inputs":0})
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"""
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raise NotImplementedError
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def __iter__(self) -> Iterator[Kw]:
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return map(self.batch_to_est_kwargs, self._dataloader)
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@@ -1,21 +1,21 @@
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from functools import partial
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from typing import Any
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from collections.abc import Callable
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from collections.abc import Callable
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import numpy as np
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import numpy as np
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import torch
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import torch
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import matplotlib.pyplot as plt
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import matplotlib.pyplot as plt
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from torch import Tensor
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from torch import Tensor
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from torch.utils.data import DataLoader
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from trainlib.trainer import Trainer
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from trainlib.trainer import Trainer
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from trainlib.estimator import EstimatorKwargs
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from trainlib.estimator import EstimatorKwargs
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from trainlib.dataloader import EstimatorDataLoader
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from trainlib.utils.type import AxesArray, SubplotsKwargs
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from trainlib.utils.type import AxesArray, SubplotsKwargs
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type SubplotFn = Callable[[plt.Axes, int, Tensor, Tensor], None]
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type SubplotFn = Callable[[plt.Axes, int, Tensor, Tensor], None]
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type ContextFn = Callable[[plt.Axes, str], None]
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type ContextFn = Callable[[plt.Axes, str], None]
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class Plotter[B, K: EstimatorKwargs]:
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class Plotter[Kw: EstimatorKwargs]:
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"""
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"""
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TODOs:
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TODOs:
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@@ -30,10 +30,9 @@ class Plotter[B, K: EstimatorKwargs]:
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def __init__(
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def __init__(
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self,
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self,
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trainer: Trainer[..., K],
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trainer: Trainer[Any, Kw],
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dataloaders: list[DataLoader],
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dataloaders: list[EstimatorDataLoader[Any, Kw]],
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batch_estimator_map: Callable[[B, Trainer], ...],
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kw_to_actual: Callable[[Kw], Tensor],
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estimator_to_output_map: Callable[[K], ...],
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dataloader_labels: list[str] | None = None,
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dataloader_labels: list[str] | None = None,
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) -> None:
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) -> None:
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self.trainer = trainer
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self.trainer = trainer
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@@ -41,47 +40,21 @@ class Plotter[B, K: EstimatorKwargs]:
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self.dataloader_labels = (
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self.dataloader_labels = (
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dataloader_labels or list(map(str, range(1, len(dataloaders)+1)))
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dataloader_labels or list(map(str, range(1, len(dataloaders)+1)))
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)
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)
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self.batch_estimator_map = batch_estimator_map
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self.kw_to_actual = kw_to_actual
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self.estimator_to_output_map = estimator_to_output_map
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self._outputs: list[list[Tensor]] | None = None
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self._outputs: list[list[Tensor]] | None = None
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self._metrics: list[list[dict[str, float]]] | None = None
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self._metrics: list[list[dict[str, float]]] | None = None
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self._batch_outputs_fn = partial(
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self.trainer.get_batch_outputs,
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batch_estimator_map=batch_estimator_map
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)
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self._batch_metrics_fn = partial(
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self.trainer.get_batch_metrics,
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batch_estimator_map=batch_estimator_map
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)
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self._data_tuples = None
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self._data_tuples = None
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@property
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def outputs(self) -> list[list[Tensor]]:
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if self._outputs is None:
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self._outputs = [
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list(map(self._batch_outputs_fn, loader))
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for loader in self.dataloaders
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]
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return self._outputs
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@property
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def metrics(self) -> list[list[dict[str, float]]]:
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if self._metrics is None:
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self._metrics = [
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list(map(self._batch_metrics_fn, loader))
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for loader in self.dataloaders
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]
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return self._metrics
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@property
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@property
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def data_tuples(self) -> list[tuple[Tensor, Tensor, str]]:
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def data_tuples(self) -> list[tuple[Tensor, Tensor, str]]:
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"""
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"""
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Produce data items; to be cached. Zip later with axes
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Produce data items; to be cached. Zip later with axes
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"""
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"""
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self.trainer.estimator.eval()
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if self._data_tuples is not None:
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if self._data_tuples is not None:
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return self._data_tuples
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return self._data_tuples
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@@ -89,10 +62,14 @@ class Plotter[B, K: EstimatorKwargs]:
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for i, loader in enumerate(self.dataloaders):
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for i, loader in enumerate(self.dataloaders):
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label = self.dataloader_labels[i]
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label = self.dataloader_labels[i]
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batch = next(iter(loader))
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actual = torch.cat([
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est_kwargs = self.batch_estimator_map(batch, self.trainer)
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self.kw_to_actual(batch_kwargs).detach().cpu()
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actual = self.estimator_to_output_map(est_kwargs)
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for batch_kwargs in loader
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output = self._batch_outputs_fn(batch)
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])
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output = torch.cat([
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self.trainer.estimator(**batch_kwargs)[0].detach().cpu()
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for batch_kwargs in loader
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])
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data_tuples.append((actual, output, label))
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data_tuples.append((actual, output, label))
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@@ -219,6 +196,14 @@ class Plotter[B, K: EstimatorKwargs]:
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Note: transform samples in dataloader definitions beforehand if you
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Note: transform samples in dataloader definitions beforehand if you
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want to change data
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want to change data
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.. todo::
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Merge in logic from general diagnostics, allowing collapse from
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either dim and transposing.
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Later: multi-trial error bars, or at least the ability to pass that
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downstream
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Parameters:
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Parameters:
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row_size:
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row_size:
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col_size:
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col_size:
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@@ -462,3 +447,72 @@ class Plotter[B, K: EstimatorKwargs]:
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combine_dims=combine_dims,
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combine_dims=combine_dims,
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figure_kwargs=figure_kwargs,
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figure_kwargs=figure_kwargs,
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)
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)
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def estimator_diagnostic(
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self,
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row_size: int | float = 2,
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col_size: int | float = 4,
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session_name: str | None = None,
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combine_groups: bool = False,
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combine_metrics: bool = False,
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transpose_layout: bool = False,
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figure_kwargs: SubplotsKwargs | None = None,
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):
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session_map = self.trainer._event_log
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session_name = session_name or next(iter(session_map))
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groups = session_map[session_name]
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num_metrics = len(groups[next(iter(groups))])
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colors = plt.rcParams["axes.prop_cycle"].by_key()["color"]
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rows = 1 if combine_groups else len(groups)
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cols = 1 if combine_metrics else num_metrics
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if transpose_layout:
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rows, cols = cols, rows
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fig, axes = self._create_subplots(
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rows=rows,
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cols=cols,
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row_size=row_size,
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col_size=col_size,
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figure_kwargs=figure_kwargs,
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)
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if transpose_layout:
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axes = axes.T
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for i, group_name in enumerate(groups):
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axes_row = axes[0 if combine_groups else i]
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group_metrics = groups[group_name]
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for j, metric_name in enumerate(group_metrics):
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ax = axes_row[0 if combine_metrics else j]
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metric_dict = group_metrics[metric_name]
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metric_data = np.array([
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(k, np.mean(v)) for k, v in metric_dict.items()
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])
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if combine_groups and combine_metrics:
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label = f"{group_name}-{metric_name}"
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title_prefix = "all"
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elif combine_groups:
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label = group_name
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title_prefix = metric_name
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# elif combine_metrics:
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else:
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label = metric_name
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title_prefix = group_name
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# else:
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# label = ""
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# title_prefix = f"{group_name},{metric_name}"
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ax.plot(
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metric_data[:, 0],
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metric_data[:, 1],
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label=label,
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# color=colors[j],
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)
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ax.set_title(f"[{title_prefix}] Metrics over epochs")
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ax.set_xlabel("epoch", fontstyle='italic')
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ax.set_ylabel("value", fontstyle='italic')
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ax.legend()
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@@ -1,5 +1,15 @@
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"""
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"""
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Core interface for training ``Estimators`` with ``Datasets``
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Core interface for training ``Estimators`` with ``Datasets``
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.. admonition:: Design of preview ``get_dataloaders()``
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Note how much this method is doing, and the positivity in letting that be
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more explicit elsewhere. The assignment of transforms to datasets before
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wrapping as loaders is chief among these items, alongside the balancing and
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splitting; I think those are hamfisted here to make it work with the old
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setup, but I generally it's not consistent with the name "get dataloaders"
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(i.e., and also balance and split and set transforms)
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"""
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"""
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import os
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import os
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@@ -7,48 +17,41 @@ import time
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import logging
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import logging
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from io import BytesIO
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from io import BytesIO
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from copy import deepcopy
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from copy import deepcopy
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from typing import Any, Self
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from typing import Any
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from pathlib import Path
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from pathlib import Path
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from collections import defaultdict
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from collections import defaultdict
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from collections.abc import Callable
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import torch
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import torch
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from tqdm import tqdm
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from tqdm import tqdm
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from torch import cuda, Tensor
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from torch import cuda, Tensor
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from torch.optim import Optimizer
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from torch.optim import Optimizer
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from torch.nn.utils import clip_grad_norm_
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from torch.nn.utils import clip_grad_norm_
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from torch.utils.data import Dataset, DataLoader
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from torch.utils.tensorboard import SummaryWriter
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from torch.utils.tensorboard import SummaryWriter
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from trainlib.dataset import BatchedDataset
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from trainlib.estimator import Estimator, EstimatorKwargs
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from trainlib.estimator import Estimator, EstimatorKwargs
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from trainlib.transform import Transform
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from trainlib.utils.map import nested_defaultdict
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from trainlib.utils.type import (
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from trainlib.dataloader import EstimatorDataLoader
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SplitKwargs,
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LoaderKwargs,
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BalanceKwargs,
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)
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from trainlib.utils.module import ModelWrapper
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from trainlib.utils.module import ModelWrapper
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|
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logger: logging.Logger = logging.getLogger(__name__)
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logger: logging.Logger = logging.getLogger(__name__)
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class Trainer[I, K: EstimatorKwargs]:
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class Trainer[I, Kw: EstimatorKwargs]:
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"""
|
"""
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||||||
Training interface for optimizing parameters of ``Estimators`` with
|
Training interface for optimizing parameters of ``Estimators`` with
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``Datasets``.
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``Datasets``.
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|
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This class is generic to a dataset item type ``I`` and an estimator kwarg
|
This class is generic to a dataset item type ``I`` and an estimator kwarg
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type ``K``. These are the two primary components ``Trainer`` objects need
|
type ``Kw``. These are the two primary components ``Trainer`` objects need
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to coordinate: they ultimately rely on a provided map to ensure data items
|
to coordinate: they ultimately rely on a provided map to ensure data items
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||||||
(type ``I``) from a dataset are appropriately routed as inputs to key
|
(type ``I``) from a dataset are appropriately routed as inputs to key
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||||||
estimator methods (like ``forward()`` and ``loss()``), which accept inputs
|
estimator methods (like ``forward()`` and ``loss()``), which accept inputs
|
||||||
of type ``K``.
|
of type ``Kw``.
|
||||||
"""
|
"""
|
||||||
|
|
||||||
def __init__(
|
def __init__(
|
||||||
self,
|
self,
|
||||||
estimator: Estimator[K],
|
estimator: Estimator[Kw],
|
||||||
device: str | None = None,
|
device: str | None = None,
|
||||||
chkpt_dir: str = "chkpt/",
|
chkpt_dir: str = "chkpt/",
|
||||||
tblog_dir: str = "tblog/",
|
tblog_dir: str = "tblog/",
|
||||||
@@ -93,6 +96,7 @@ class Trainer[I, K: EstimatorKwargs]:
|
|||||||
|
|
||||||
self.estimator = estimator
|
self.estimator = estimator
|
||||||
self.estimator.to(self.device)
|
self.estimator.to(self.device)
|
||||||
|
self._event_log = nested_defaultdict(4, list)
|
||||||
|
|
||||||
self.chkpt_dir = Path(chkpt_dir).resolve()
|
self.chkpt_dir = Path(chkpt_dir).resolve()
|
||||||
self.tblog_dir = Path(tblog_dir).resolve()
|
self.tblog_dir = Path(tblog_dir).resolve()
|
||||||
@@ -105,56 +109,28 @@ class Trainer[I, K: EstimatorKwargs]:
|
|||||||
"""
|
"""
|
||||||
|
|
||||||
self._epoch: int = 1
|
self._epoch: int = 1
|
||||||
self._summary = defaultdict(lambda: defaultdict(dict))
|
self._summary = defaultdict(lambda: defaultdict(list))
|
||||||
self._event_log = defaultdict(lambda: defaultdict(lambda: defaultdict(dict)))
|
|
||||||
|
|
||||||
self._val_loss = float("inf")
|
self._conv_loss = float("inf")
|
||||||
self._best_val_loss = float("inf")
|
self._best_conv_loss = float("inf")
|
||||||
self._stagnant_epochs = 0
|
self._stagnant_epochs = 0
|
||||||
self._best_model_state_dict: dict[str, Any] = {}
|
self._best_model_state_dict: dict[str, Any] = {}
|
||||||
|
|
||||||
def _train_epoch(
|
def _train_epoch(
|
||||||
self,
|
self,
|
||||||
train_loader: DataLoader,
|
loader: EstimatorDataLoader[Any, Kw],
|
||||||
batch_estimator_map: Callable[[I, Self], K],
|
|
||||||
optimizers: tuple[Optimizer, ...],
|
optimizers: tuple[Optimizer, ...],
|
||||||
max_grad_norm: float | None = None,
|
max_grad_norm: float | None = None,
|
||||||
) -> list[float]:
|
) -> list[float]:
|
||||||
"""
|
"""
|
||||||
Train the estimator for a single epoch.
|
Train the estimator for a single epoch.
|
||||||
|
|
||||||
.. admonition:: On summary writers
|
|
||||||
|
|
||||||
Estimators can have several optimizers, and therefore can emit
|
|
||||||
several losses. This is a fairly unique case, but it's needed when
|
|
||||||
we want to optimize particular parameters in a particular order
|
|
||||||
(as in multi-model architectures, e.g., GANs). Point being: we
|
|
||||||
always iterate over optimizers/losses, even in the common case
|
|
||||||
where there's just a single value, and we index collections across
|
|
||||||
batches accordingly.
|
|
||||||
|
|
||||||
A few of the trackers, with the same size as the number of
|
|
||||||
optimizers:
|
|
||||||
|
|
||||||
- ``train_loss_sums``: tracks loss sums across all batches for the
|
|
||||||
epoch, used to update the loop preview text after each batch with
|
|
||||||
the current average loss
|
|
||||||
- ``train_loss_items``: collects current batch losses, recorded by
|
|
||||||
the TB writer
|
|
||||||
|
|
||||||
If there are ``M`` optimizers/losses, we log ``M`` loss terms to
|
|
||||||
the TB writer after each *batch* (not epoch). We could aggregate at
|
|
||||||
an epoch level, but parameter updates take place after each batch,
|
|
||||||
so large model changes can occur over the course of an epoch
|
|
||||||
(whereas the model remains the same over the course batch evals).
|
|
||||||
"""
|
"""
|
||||||
|
|
||||||
loss_sums = []
|
loss_sums = []
|
||||||
self.estimator.train()
|
self.estimator.train()
|
||||||
with tqdm(train_loader, unit="batch") as batches:
|
with tqdm(loader, unit="batch") as batches:
|
||||||
for i, batch_data in enumerate(batches):
|
for i, batch_kwargs in enumerate(batches):
|
||||||
est_kwargs = batch_estimator_map(batch_data, self)
|
losses = self.estimator.loss(**batch_kwargs)
|
||||||
losses = self.estimator.loss(**est_kwargs)
|
|
||||||
|
|
||||||
for o_idx, (loss, optimizer) in enumerate(
|
for o_idx, (loss, optimizer) in enumerate(
|
||||||
zip(losses, optimizers, strict=True)
|
zip(losses, optimizers, strict=True)
|
||||||
@@ -186,9 +162,8 @@ class Trainer[I, K: EstimatorKwargs]:
|
|||||||
|
|
||||||
def _eval_epoch(
|
def _eval_epoch(
|
||||||
self,
|
self,
|
||||||
loader: DataLoader,
|
loader: EstimatorDataLoader[Any, Kw],
|
||||||
batch_estimator_map: Callable[[I, Self], K],
|
label: str
|
||||||
loader_label: str,
|
|
||||||
) -> list[float]:
|
) -> list[float]:
|
||||||
"""
|
"""
|
||||||
Perform and record validation scores for a single epoch.
|
Perform and record validation scores for a single epoch.
|
||||||
@@ -217,22 +192,21 @@ class Trainer[I, K: EstimatorKwargs]:
|
|||||||
loss_sums = []
|
loss_sums = []
|
||||||
self.estimator.eval()
|
self.estimator.eval()
|
||||||
with tqdm(loader, unit="batch") as batches:
|
with tqdm(loader, unit="batch") as batches:
|
||||||
for i, batch_data in enumerate(batches):
|
for i, batch_kwargs in enumerate(batches):
|
||||||
est_kwargs = batch_estimator_map(batch_data, self)
|
losses = self.estimator.loss(**batch_kwargs)
|
||||||
losses = self.estimator.loss(**est_kwargs)
|
|
||||||
|
|
||||||
# one-time logging
|
# one-time logging
|
||||||
if self._epoch == 0:
|
if self._epoch == 0:
|
||||||
self._writer.add_graph(
|
self._writer.add_graph(
|
||||||
ModelWrapper(self.estimator), est_kwargs
|
ModelWrapper(self.estimator), batch_kwargs
|
||||||
)
|
)
|
||||||
# once-per-epoch logging
|
# once-per-epoch logging
|
||||||
if i == 0:
|
if i == 0:
|
||||||
self.estimator.epoch_write(
|
self.estimator.epoch_write(
|
||||||
self._writer,
|
self._writer,
|
||||||
step=self._epoch,
|
step=self._epoch,
|
||||||
group=loader_label,
|
group=label,
|
||||||
**est_kwargs
|
**batch_kwargs
|
||||||
)
|
)
|
||||||
|
|
||||||
loss_items = []
|
loss_items = []
|
||||||
@@ -250,21 +224,21 @@ class Trainer[I, K: EstimatorKwargs]:
|
|||||||
|
|
||||||
# log individual loss terms after each batch
|
# log individual loss terms after each batch
|
||||||
for o_idx, loss_item in enumerate(loss_items):
|
for o_idx, loss_item in enumerate(loss_items):
|
||||||
self._log_event(loader_label, f"loss_{o_idx}", loss_item)
|
self._log_event(label, f"loss_{o_idx}", loss_item)
|
||||||
|
|
||||||
# log metrics for batch
|
# log metrics for batch
|
||||||
estimator_metrics = self.estimator.metrics(**est_kwargs)
|
estimator_metrics = self.estimator.metrics(**batch_kwargs)
|
||||||
for metric_name, metric_value in estimator_metrics.items():
|
for metric_name, metric_value in estimator_metrics.items():
|
||||||
self._log_event(loader_label, metric_name, metric_value)
|
self._log_event(label, metric_name, metric_value)
|
||||||
|
|
||||||
return loss_sums
|
return loss_sums
|
||||||
|
|
||||||
def _eval_loaders(
|
def _eval_loaders(
|
||||||
self,
|
self,
|
||||||
loaders: list[DataLoader],
|
train_loader: EstimatorDataLoader[Any, Kw],
|
||||||
batch_estimator_map: Callable[[I, Self], K],
|
val_loader: EstimatorDataLoader[Any, Kw] | None = None,
|
||||||
loader_labels: list[str],
|
aux_loaders: list[EstimatorDataLoader[Any, Kw]] | None = None,
|
||||||
) -> dict[str, list[float]]:
|
) -> tuple[list[float], list[float] | None, *list[float]]:
|
||||||
"""
|
"""
|
||||||
Evaluate estimator over each provided dataloader.
|
Evaluate estimator over each provided dataloader.
|
||||||
|
|
||||||
@@ -280,40 +254,50 @@ class Trainer[I, K: EstimatorKwargs]:
|
|||||||
information (just aggregated losses are provided here).
|
information (just aggregated losses are provided here).
|
||||||
"""
|
"""
|
||||||
|
|
||||||
return {
|
train_loss = self._eval_epoch(train_loader, "train")
|
||||||
label: self._eval_epoch(loader, batch_estimator_map, label)
|
val_loss = self._eval_epoch(val_loader, "val") if val_loader else None
|
||||||
for loader, label in zip(loaders, loader_labels, strict=True)
|
|
||||||
}
|
|
||||||
|
|
||||||
def train[B](
|
aux_loaders = aux_loaders or []
|
||||||
|
aux_losses = [
|
||||||
|
self._eval_epoch(aux_loader, f"aux{i}")
|
||||||
|
for i, aux_loader in enumerate(aux_loaders)
|
||||||
|
]
|
||||||
|
|
||||||
|
return train_loss, val_loss, *aux_losses
|
||||||
|
|
||||||
|
def train(
|
||||||
self,
|
self,
|
||||||
dataset: BatchedDataset[..., ..., I],
|
train_loader: EstimatorDataLoader[Any, Kw],
|
||||||
batch_estimator_map: Callable[[B, Self], K],
|
val_loader: EstimatorDataLoader[Any, Kw] | None = None,
|
||||||
|
aux_loaders: list[EstimatorDataLoader[Any, Kw]] | None = None,
|
||||||
|
*,
|
||||||
lr: float = 1e-3,
|
lr: float = 1e-3,
|
||||||
eps: float = 1e-8,
|
eps: float = 1e-8,
|
||||||
max_grad_norm: float | None = None,
|
max_grad_norm: float | None = None,
|
||||||
max_epochs: int = 10,
|
max_epochs: int = 10,
|
||||||
stop_after_epochs: int = 5,
|
stop_after_epochs: int = 5,
|
||||||
batch_size: int = 256,
|
|
||||||
val_frac: float = 0.1,
|
|
||||||
train_transform: Transform | None = None,
|
|
||||||
val_transform: Transform | None = None,
|
|
||||||
dataset_split_kwargs: SplitKwargs | None = None,
|
|
||||||
dataset_balance_kwargs: BalanceKwargs | None = None,
|
|
||||||
dataloader_kwargs: LoaderKwargs | None = None,
|
|
||||||
summarize_every: int = 1,
|
summarize_every: int = 1,
|
||||||
chkpt_every: int = 1,
|
chkpt_every: int = 1,
|
||||||
resume_latest: bool = False,
|
|
||||||
session_name: str | None = None,
|
session_name: str | None = None,
|
||||||
summary_writer: SummaryWriter | None = None,
|
summary_writer: SummaryWriter | None = None,
|
||||||
aux_loaders: list[DataLoader] | None = None,
|
|
||||||
aux_loader_labels: list[str] | None = None,
|
|
||||||
) -> Estimator:
|
) -> Estimator:
|
||||||
"""
|
"""
|
||||||
TODO: consider making the dataloader ``collate_fn`` an explicit
|
.. todo::
|
||||||
parameter with a type signature that reflects ``B``, connecting the
|
|
||||||
``batch_estimator_map`` somewhere. Might also re-type a ``DataLoader``
|
- consider making the dataloader ``collate_fn`` an explicit
|
||||||
in-house to allow a generic around ``B``
|
parameter with a type signature that reflects ``B``, connecting
|
||||||
|
the ``batch_estimator_map`` somewhere. Might also re-type a
|
||||||
|
``DataLoader`` in-house to allow a generic around ``B``
|
||||||
|
- Rework the validation specification. Accept something like a
|
||||||
|
"validate_with" parameter, or perhaps just move entirely to
|
||||||
|
accepting a dataloader list, label list. You might then also need
|
||||||
|
a "train_with," and you could set up sensible defaults so you
|
||||||
|
basically have the same interaction as now. The "problem" is you
|
||||||
|
always need a train set, and there's some clearly dependent logic
|
||||||
|
on a val set, but you don't *need* val, so this should be
|
||||||
|
slightly reworked (and the more general, *probably* the better in
|
||||||
|
this case, given I want to plug into the Plotter with possibly
|
||||||
|
several purely eval sets over the model training lifetime).
|
||||||
|
|
||||||
Note: this method attempts to implement a general scheme for passing
|
Note: this method attempts to implement a general scheme for passing
|
||||||
needed items to the estimator's loss function from the dataloader. The
|
needed items to the estimator's loss function from the dataloader. The
|
||||||
@@ -355,7 +339,7 @@ class Trainer[I, K: EstimatorKwargs]:
|
|||||||
This function should map from batches - which *may* be item
|
This function should map from batches - which *may* be item
|
||||||
shaped, i.e., have an ``I`` skeleton, even if stacked items may be
|
shaped, i.e., have an ``I`` skeleton, even if stacked items may be
|
||||||
different on the inside - into estimator keyword arguments (type
|
different on the inside - into estimator keyword arguments (type
|
||||||
``K``). Collation behavior from a DataLoader (which can be
|
``Kw``). Collation behavior from a DataLoader (which can be
|
||||||
customized) doesn't consistently yield a known type shape, however,
|
customized) doesn't consistently yield a known type shape, however,
|
||||||
so it's not appropriate to use ``I`` as the callable param type.
|
so it's not appropriate to use ``I`` as the callable param type.
|
||||||
|
|
||||||
@@ -416,18 +400,13 @@ class Trainer[I, K: EstimatorKwargs]:
|
|||||||
dataset
|
dataset
|
||||||
val_split_frac: fraction of dataset to use for validation
|
val_split_frac: fraction of dataset to use for validation
|
||||||
chkpt_every: how often model checkpoints should be saved
|
chkpt_every: how often model checkpoints should be saved
|
||||||
resume_latest: resume training from the latest available checkpoint
|
|
||||||
in the `chkpt_dir`
|
|
||||||
"""
|
"""
|
||||||
|
|
||||||
logger.info("> Begin train loop:")
|
logger.info("> Begin train loop:")
|
||||||
logger.info(f"| > {lr=}")
|
logger.info(f"| > {lr=}")
|
||||||
logger.info(f"| > {eps=}")
|
logger.info(f"| > {eps=}")
|
||||||
logger.info(f"| > {max_epochs=}")
|
logger.info(f"| > {max_epochs=}")
|
||||||
logger.info(f"| > {batch_size=}")
|
|
||||||
logger.info(f"| > {val_frac=}")
|
|
||||||
logger.info(f"| > {chkpt_every=}")
|
logger.info(f"| > {chkpt_every=}")
|
||||||
logger.info(f"| > {resume_latest=}")
|
|
||||||
logger.info(f"| > with device: {self.device}")
|
logger.info(f"| > with device: {self.device}")
|
||||||
logger.info(f"| > core count: {os.cpu_count()}")
|
logger.info(f"| > core count: {os.cpu_count()}")
|
||||||
|
|
||||||
@@ -435,25 +414,9 @@ class Trainer[I, K: EstimatorKwargs]:
|
|||||||
tblog_path = Path(self.tblog_dir, self._session_name)
|
tblog_path = Path(self.tblog_dir, self._session_name)
|
||||||
self._writer = summary_writer or SummaryWriter(f"{tblog_path}")
|
self._writer = summary_writer or SummaryWriter(f"{tblog_path}")
|
||||||
|
|
||||||
aux_loaders = aux_loaders or []
|
|
||||||
aux_loader_labels = aux_loader_labels or []
|
|
||||||
|
|
||||||
optimizers = self.estimator.optimizers(lr=lr, eps=eps)
|
|
||||||
train_loader, val_loader = self.get_dataloaders(
|
|
||||||
dataset,
|
|
||||||
batch_size,
|
|
||||||
val_frac=val_frac,
|
|
||||||
train_transform=train_transform,
|
|
||||||
val_transform=val_transform,
|
|
||||||
dataset_split_kwargs=dataset_split_kwargs,
|
|
||||||
dataset_balance_kwargs=dataset_balance_kwargs,
|
|
||||||
dataloader_kwargs=dataloader_kwargs,
|
|
||||||
)
|
|
||||||
loaders = [train_loader, val_loader, *aux_loaders]
|
|
||||||
loader_labels = ["train", "val", *aux_loader_labels]
|
|
||||||
|
|
||||||
# evaluate model on dataloaders once before training starts
|
# evaluate model on dataloaders once before training starts
|
||||||
self._eval_loaders(loaders, batch_estimator_map, loader_labels)
|
self._eval_loaders(train_loader, val_loader, aux_loaders)
|
||||||
|
optimizers = self.estimator.optimizers(lr=lr, eps=eps)
|
||||||
|
|
||||||
while self._epoch <= max_epochs and not self._converged(
|
while self._epoch <= max_epochs and not self._converged(
|
||||||
self._epoch, stop_after_epochs
|
self._epoch, stop_after_epochs
|
||||||
@@ -464,22 +427,14 @@ class Trainer[I, K: EstimatorKwargs]:
|
|||||||
print(f"Stagnant epochs {stag_frac}...")
|
print(f"Stagnant epochs {stag_frac}...")
|
||||||
|
|
||||||
epoch_start_time = time.time()
|
epoch_start_time = time.time()
|
||||||
self._train_epoch(
|
self._train_epoch(train_loader, optimizers, max_grad_norm)
|
||||||
train_loader,
|
|
||||||
batch_estimator_map,
|
|
||||||
optimizers,
|
|
||||||
max_grad_norm,
|
|
||||||
)
|
|
||||||
epoch_end_time = time.time() - epoch_start_time
|
epoch_end_time = time.time() - epoch_start_time
|
||||||
self._log_event("train", "epoch_duration", epoch_end_time)
|
self._log_event("train", "epoch_duration", epoch_end_time)
|
||||||
|
|
||||||
loss_sum_map = self._eval_loaders(
|
train_loss, val_loss, _ = self._eval_loaders(
|
||||||
loaders,
|
train_loader, val_loader, aux_loaders
|
||||||
batch_estimator_map,
|
|
||||||
loader_labels,
|
|
||||||
)
|
)
|
||||||
val_loss_sums = loss_sum_map["val"]
|
self._conv_loss = sum(val_loss) if val_loss else sum(train_loss)
|
||||||
self._val_loss = sum(val_loss_sums) / len(val_loader)
|
|
||||||
|
|
||||||
if self._epoch % summarize_every == 0:
|
if self._epoch % summarize_every == 0:
|
||||||
self._summarize()
|
self._summarize()
|
||||||
@@ -492,8 +447,8 @@ class Trainer[I, K: EstimatorKwargs]:
|
|||||||
def _converged(self, epoch: int, stop_after_epochs: int) -> bool:
|
def _converged(self, epoch: int, stop_after_epochs: int) -> bool:
|
||||||
converged = False
|
converged = False
|
||||||
|
|
||||||
if epoch == 1 or self._val_loss < self._best_val_loss:
|
if epoch == 1 or self._conv_loss < self._best_val_loss:
|
||||||
self._best_val_loss = self._val_loss
|
self._best_val_loss = self._conv_loss
|
||||||
self._stagnant_epochs = 0
|
self._stagnant_epochs = 0
|
||||||
self._best_model_state_dict = deepcopy(self.estimator.state_dict())
|
self._best_model_state_dict = deepcopy(self.estimator.state_dict())
|
||||||
else:
|
else:
|
||||||
@@ -505,110 +460,24 @@ class Trainer[I, K: EstimatorKwargs]:
|
|||||||
|
|
||||||
return converged
|
return converged
|
||||||
|
|
||||||
@staticmethod
|
|
||||||
def get_dataloaders(
|
|
||||||
dataset: BatchedDataset,
|
|
||||||
batch_size: int,
|
|
||||||
val_frac: float = 0.1,
|
|
||||||
train_transform: Transform | None = None,
|
|
||||||
val_transform: Transform | None = None,
|
|
||||||
dataset_split_kwargs: SplitKwargs | None = None,
|
|
||||||
dataset_balance_kwargs: BalanceKwargs | None = None,
|
|
||||||
dataloader_kwargs: LoaderKwargs | None = None,
|
|
||||||
) -> tuple[DataLoader, DataLoader]:
|
|
||||||
"""
|
|
||||||
Create training and validation dataloaders for the provided dataset.
|
|
||||||
|
|
||||||
.. todo::
|
|
||||||
|
|
||||||
Decide on policy for empty val dataloaders
|
|
||||||
"""
|
|
||||||
|
|
||||||
if dataset_split_kwargs is None:
|
|
||||||
dataset_split_kwargs = {}
|
|
||||||
|
|
||||||
if dataset_balance_kwargs is not None:
|
|
||||||
dataset.balance(**dataset_balance_kwargs)
|
|
||||||
|
|
||||||
if val_frac <= 0:
|
|
||||||
dataset.post_transform = train_transform
|
|
||||||
train_loader_kwargs: LoaderKwargs = {
|
|
||||||
"batch_size": min(batch_size, len(dataset)),
|
|
||||||
"num_workers": 0,
|
|
||||||
"shuffle": True,
|
|
||||||
}
|
|
||||||
if dataloader_kwargs is not None:
|
|
||||||
train_loader_kwargs: LoaderKwargs = {
|
|
||||||
**train_loader_kwargs,
|
|
||||||
**dataloader_kwargs
|
|
||||||
}
|
|
||||||
|
|
||||||
return (
|
|
||||||
DataLoader(dataset, **train_loader_kwargs),
|
|
||||||
DataLoader(Dataset())
|
|
||||||
)
|
|
||||||
|
|
||||||
train_dataset, val_dataset = dataset.split(
|
|
||||||
[1 - val_frac, val_frac],
|
|
||||||
**dataset_split_kwargs,
|
|
||||||
)
|
|
||||||
|
|
||||||
# Dataset.split() returns light Subset objects of shallow copies of the
|
|
||||||
# underlying dataset; can change the transform attribute of both splits
|
|
||||||
# w/o overwriting
|
|
||||||
train_dataset.post_transform = train_transform
|
|
||||||
val_dataset.post_transform = val_transform
|
|
||||||
|
|
||||||
train_loader_kwargs: LoaderKwargs = {
|
|
||||||
"batch_size": min(batch_size, len(train_dataset)),
|
|
||||||
"num_workers": 0,
|
|
||||||
"shuffle": True,
|
|
||||||
}
|
|
||||||
val_loader_kwargs: LoaderKwargs = {
|
|
||||||
"batch_size": min(batch_size, len(val_dataset)),
|
|
||||||
"num_workers": 0,
|
|
||||||
"shuffle": True, # shuffle to prevent homogeneous val batches
|
|
||||||
}
|
|
||||||
|
|
||||||
if dataloader_kwargs is not None:
|
|
||||||
train_loader_kwargs = {**train_loader_kwargs, **dataloader_kwargs}
|
|
||||||
val_loader_kwargs = {**val_loader_kwargs, **dataloader_kwargs}
|
|
||||||
|
|
||||||
train_loader = DataLoader(train_dataset, **train_loader_kwargs)
|
|
||||||
val_loader = DataLoader(val_dataset, **val_loader_kwargs)
|
|
||||||
|
|
||||||
return train_loader, val_loader
|
|
||||||
|
|
||||||
def _summarize(self) -> None:
|
def _summarize(self) -> None:
|
||||||
"""
|
"""
|
||||||
Flush the training summary to the TensorBoard summary writer.
|
Flush the training summary to the TensorBoard summary writer and print
|
||||||
|
metrics for the current epoch.
|
||||||
.. note:: Possibly undesirable behavior
|
|
||||||
|
|
||||||
Currently, this method aggregates metrics for the epoch summary
|
|
||||||
across all logged items *in between summarize calls*. For instance,
|
|
||||||
if I'm logging every 10 epochs, the stats at epoch=10 are actually
|
|
||||||
averages from epochs 1-10.
|
|
||||||
"""
|
"""
|
||||||
|
|
||||||
epoch_values = defaultdict(lambda: defaultdict(list))
|
|
||||||
for group, records in self._summary.items():
|
|
||||||
for name, steps in records.items():
|
|
||||||
for step, value in steps.items():
|
|
||||||
self._writer.add_scalar(f"{group}-{name}", value, step)
|
|
||||||
if step == self._epoch:
|
|
||||||
epoch_values[group][name].append(value)
|
|
||||||
|
|
||||||
print(f"==== Epoch [{self._epoch}] summary ====")
|
print(f"==== Epoch [{self._epoch}] summary ====")
|
||||||
for group, records in epoch_values.items():
|
for (group, name), epoch_map in self._summary.items():
|
||||||
for name, values in records.items():
|
for epoch, values in epoch_map.items():
|
||||||
mean_value = torch.tensor(values).mean().item()
|
mean = torch.tensor(values).mean().item()
|
||||||
|
self._writer.add_scalar(f"{group}-{name}", mean, epoch)
|
||||||
|
if epoch == self._epoch:
|
||||||
print(
|
print(
|
||||||
f"> ({len(values)}) [{group}] {name} :: {mean_value:.2f}"
|
f"> ({len(values)}) [{group}] {name} :: {mean:.2f}"
|
||||||
)
|
)
|
||||||
|
|
||||||
self._writer.flush()
|
self._writer.flush()
|
||||||
self._summary = defaultdict(lambda: defaultdict(dict))
|
self._summary = defaultdict(lambda: defaultdict(list))
|
||||||
|
|
||||||
def _get_optimizer_parameters(
|
def _get_optimizer_parameters(
|
||||||
self,
|
self,
|
||||||
@@ -622,33 +491,10 @@ class Trainer[I, K: EstimatorKwargs]:
|
|||||||
]
|
]
|
||||||
|
|
||||||
def _log_event(self, group: str, name: str, value: float) -> None:
|
def _log_event(self, group: str, name: str, value: float) -> None:
|
||||||
self._summary[group][name][self._epoch] = value
|
session, epoch = self._session_name, self._epoch
|
||||||
self._event_log[self._session_name][group][name][self._epoch] = value
|
|
||||||
|
|
||||||
def get_batch_outputs[B](
|
self._summary[group, name][epoch].append(value)
|
||||||
self,
|
self._event_log[session][group][name][epoch].append(value)
|
||||||
batch: B,
|
|
||||||
batch_estimator_map: Callable[[B, Self], K],
|
|
||||||
) -> Tensor:
|
|
||||||
self.estimator.eval()
|
|
||||||
|
|
||||||
est_kwargs = batch_estimator_map(batch, self)
|
|
||||||
output = self.estimator(**est_kwargs)[0]
|
|
||||||
output = output.detach().cpu()
|
|
||||||
|
|
||||||
return output
|
|
||||||
|
|
||||||
def get_batch_metrics[B](
|
|
||||||
self,
|
|
||||||
batch: B,
|
|
||||||
batch_estimator_map: Callable[[B, Self], K],
|
|
||||||
) -> dict[str, float]:
|
|
||||||
self.estimator.eval()
|
|
||||||
|
|
||||||
est_kwargs = batch_estimator_map(batch, self)
|
|
||||||
metrics = self.estimator.metrics(**est_kwargs)
|
|
||||||
|
|
||||||
return metrics
|
|
||||||
|
|
||||||
def save_model(self) -> None:
|
def save_model(self) -> None:
|
||||||
"""
|
"""
|
||||||
|
|||||||
10
trainlib/utils/map.py
Normal file
10
trainlib/utils/map.py
Normal file
@@ -0,0 +1,10 @@
|
|||||||
|
from collections import defaultdict
|
||||||
|
|
||||||
|
|
||||||
|
def nested_defaultdict(
|
||||||
|
depth: int,
|
||||||
|
final: type = dict,
|
||||||
|
) -> defaultdict:
|
||||||
|
if depth == 1:
|
||||||
|
return defaultdict(final)
|
||||||
|
return defaultdict(lambda: nested_defaultdict(depth - 1, final))
|
||||||
@@ -11,7 +11,7 @@ from trainlib.dataset import BatchedDataset
|
|||||||
type AxesArray = np.ndarray[tuple[int, int], np.dtype[np.object_]]
|
type AxesArray = np.ndarray[tuple[int, int], np.dtype[np.object_]]
|
||||||
|
|
||||||
class LoaderKwargs(TypedDict, total=False):
|
class LoaderKwargs(TypedDict, total=False):
|
||||||
batch_size: int
|
batch_size: int | None
|
||||||
shuffle: bool
|
shuffle: bool
|
||||||
sampler: Sampler | Iterable | None
|
sampler: Sampler | Iterable | None
|
||||||
batch_sampler: Sampler[list] | Iterable[list] | None
|
batch_sampler: Sampler[list] | Iterable[list] | None
|
||||||
|
|||||||
Reference in New Issue
Block a user