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23 changed files with 1574 additions and 556 deletions

11
TODO.md Normal file
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# Long-term
- Implement a dataloader in-house, with a clear, lightweight mechanism for
collection-of-structures to structure-of-collections. For multi-proc handling
(happens in torch's dataloader, as well as the BatchedDataset for two
different purposes), we should rely on (a hopefully more stable) `execlib`.
- `Domains` may be externalized (`co3` or `convlib`)
- Up next: CLI, fully JSON-ification of model selection + train.
- Consider a "multi-train" alternative (or arg support in `train()`) for
training many "rollouts" from the same base estimator (basically forks under
different seeds). For architecture benchmarking above all, seeing average
training behavior. Consider corresponding `Plotter` methods (error bars)

29
example/example.json Normal file
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@@ -0,0 +1,29 @@
{
"estimator_name": "mlp",
"dataset_name": "random_xy_dataset",
"dataloader_name": "supervised_data_loader",
"estimator_kwargs": {
"input_dim": 4,
"output_dim": 2
},
"dataset_kwargs": {
"num_samples": 100000,
"preload": true,
"input_dim": 4,
"output_dim": 2
},
"dataset_split_fracs": {
"train": 0.4,
"val": 0.3,
"aux": [0.3]
},
"dataloader_kwargs": {
"batch_size": 16
},
"train_kwargs": {
"summarize_every": 20,
"max_epochs": 100,
"stop_after_epochs": 100
},
"load_only": false
}

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@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
[project]
name = "trainlib"
version = "0.1.2"
version = "0.3.0"
description = "Minimal framework for ML modeling. Supports advanced dataset operations and streamlined training."
requires-python = ">=3.13"
authors = [
@@ -30,6 +30,7 @@ dependencies = [
"numpy>=2.4.1",
"tensorboard>=2.20.0",
"tqdm>=4.67.1",
"setuptools<=81.0.0", # here currently b/c tensorboard breaks @ v82.0.0
]
[project.scripts]

18
trainlib/__main__.py Normal file
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@@ -0,0 +1,18 @@
import logging
from trainlib.cli import create_parser
def main() -> None:
parser = create_parser()
args = parser.parse_args()
# skim off log level to handle higher-level option
if hasattr(args, "log_level") and args.log_level is not None:
logging.basicConfig(level=args.log_level)
args.func(args) if "func" in args else parser.print_help()
if __name__ == "__main__":
main()

26
trainlib/cli/__init__.py Normal file
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@@ -0,0 +1,26 @@
import logging
import argparse
from trainlib.cli import train
logger: logging.Logger = logging.getLogger(__name__)
def create_parser() -> argparse.ArgumentParser:
parser = argparse.ArgumentParser(
description="trainlib cli",
# formatter_class=argparse.RawDescriptionHelpFormatter,
)
parser.add_argument(
"--log-level",
type=int,
metavar="int",
choices=[10, 20, 30, 40, 50],
help="Log level: 10=DEBUG, 20=INFO, 30=WARNING, 40=ERROR, 50=CRITICAL",
)
subparsers = parser.add_subparsers(help="subcommand help")
train.register_parser(subparsers)
return parser

164
trainlib/cli/train.py Normal file
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@@ -0,0 +1,164 @@
import gc
import json
import argparse
from typing import Any
from argparse import _SubParsersAction
import torch
from trainlib.trainer import Trainer
from trainlib.datasets import dataset_map
from trainlib.estimator import Estimator
from trainlib.estimators import estimator_map
from trainlib.dataloaders import dataloader_map
def prepare_run() -> None:
# prepare cuda memory
memory_allocated = torch.cuda.memory_allocated() / 1024**3 # GB
print(f"CUDA allocated: {memory_allocated}GB")
if torch.cuda.is_available():
torch.cuda.empty_cache()
gc.collect()
def run(
estimator_name: str,
dataset_name: str,
dataloader_name: str,
estimator_kwargs: dict[str, Any] | None = None,
dataset_kwargs: dict[str, Any] | None = None,
dataset_split_fracs: dict[str, Any] | None = None,
dataset_split_kwargs: dict[str, Any] | None = None,
dataloader_kwargs: dict[str, Any] | None = None,
trainer_kwargs: dict[str, Any] | None = None,
train_kwargs: dict[str, Any] | None = None,
load_only: bool = False,
) -> Trainer | Estimator:
try:
estimator_cls = estimator_map[estimator_name]
except KeyError as err:
raise ValueError(
f"Invalid estimator name '{estimator_name}',"
f"must be one of {estimator_map.keys()}"
) from err
try:
dataset_cls = dataset_map[dataset_name]
except KeyError as err:
raise ValueError(
f"Invalid dataset name '{dataset_name}',"
f"must be one of {dataset_map.keys()}"
) from err
try:
dataloader_cls = dataloader_map[dataloader_name]
except KeyError as err:
raise ValueError(
f"Invalid dataloader name '{dataloader_name}',"
f"must be one of {dataloader_map.keys()}"
) from err
estimator_kwargs = estimator_kwargs or {}
dataset_kwargs = dataset_kwargs or {}
dataset_split_fracs = dataset_split_fracs or {}
dataset_split_kwargs = dataset_split_kwargs or {}
dataloader_kwargs = dataloader_kwargs or {}
trainer_kwargs = trainer_kwargs or {}
train_kwargs = train_kwargs or {}
default_estimator_kwargs = {}
default_dataset_kwargs = {}
default_dataset_split_kwargs = {}
default_dataset_split_fracs = {"train": 1.0, "val": 0.0, "aux": []}
default_dataloader_kwargs = {}
default_trainer_kwargs = {}
default_train_kwargs = {}
estimator_kwargs = {**default_estimator_kwargs, **estimator_kwargs}
dataset_kwargs = {**default_dataset_kwargs, **dataset_kwargs}
dataset_split_kwargs = {**default_dataset_split_kwargs, **dataset_split_kwargs}
dataset_split_fracs = {**default_dataset_split_fracs, **dataset_split_fracs}
dataloader_kwargs = {**default_dataloader_kwargs, **dataloader_kwargs}
trainer_kwargs = {**default_trainer_kwargs, **trainer_kwargs}
train_kwargs = {**default_train_kwargs, **train_kwargs}
estimator = estimator_cls(**estimator_kwargs)
dataset = dataset_cls(**dataset_kwargs)
train_dataset, val_dataset, *aux_datasets = dataset.split(
fracs=[
dataset_split_fracs["train"],
dataset_split_fracs["val"],
*dataset_split_fracs["aux"]
],
**dataset_split_kwargs
)
train_loader = dataloader_cls(train_dataset, **dataloader_kwargs)
val_loader = dataloader_cls(val_dataset, **dataloader_kwargs)
aux_loaders = [
dataloader_cls(aux_dataset, **dataloader_kwargs)
for aux_dataset in aux_datasets
]
trainer = Trainer(
estimator,
**trainer_kwargs,
)
if load_only:
return trainer
return trainer.train(
train_loader=train_loader,
val_loader=val_loader,
aux_loaders=aux_loaders,
**train_kwargs,
)
def run_from_json(
parameters_json: str | None = None,
parameters_file: str | None = None,
) -> Trainer | Estimator:
if not (parameters_json or parameters_file):
raise ValueError("parameter json or file required")
parameters: dict[str, Any]
if parameters_json:
try:
parameters = json.loads(parameters_json)
except json.JSONDecodeError as e:
raise ValueError(f"Invalid JSON format: {e}") from e
except Exception as e:
raise ValueError(f"Error loading JSON parameters: {e}") from e
elif parameters_file:
try:
with open(parameters_file, encoding="utf-8") as f:
parameters = json.load(f)
except FileNotFoundError as e:
raise ValueError(f"JSON file not found: {parameters_file}") from e
except Exception as e:
raise ValueError(f"Error loading JSON parameters: {e}") from e
return run(**parameters)
def handle_train(args: argparse.Namespace) -> None:
run_from_json(args.parameters_json, args.parameters_file)
def register_parser(subparsers: _SubParsersAction) -> None:
parser = subparsers.add_parser("train", help="run training loop")
parser.add_argument(
"--parameters-json",
type=str,
help="Raw JSON string with train parameters",
)
parser.add_argument(
"--parameters-file",
type=str,
help="Path to JSON file with train parameters",
)
parser.set_defaults(func=handle_train)

102
trainlib/dataloader.py Normal file
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@@ -0,0 +1,102 @@
"""
This class took me a long time to really settle into. It's a connector, and it
feels redundant in many ways, so I've nearly deleted it several times while
talking through the design. But in total, I think it serves a clear purpose.
Reasons:
- Need a typed dataloader, even if I know the type of my attached transform
- Need a new scope that uses the same base dataset without interfering with the
transform attribute; a design that sets or relies on that is subject to
conflict
- Why not just use vanilla DataLoaders?
I'd like to, but the two reasons above make it clear why this is challenging:
I don't get static checks on the structures returned during iteration, and
while you can control ad hoc data transforms via dataset ``post_transforms``,
things can get messy if you need to do that for many transforms using the
same dataset (without copying). Simplest way around this is just a new scope
with the same underlying dataset instance and a transform wrapper around the
iterator; no interference with object attributes.
This is really just meant as the minimum viable logic needed to accomplish the
above - it's a very lightweight wrapper on the base ``DataLoader`` object.
There's an explicit type upper bound ``Kw: EstimatorKwargs``, but it is
otherwise a completely general transform over dataloader batches, highlighting
that it's *mostly* here to place nice with type checks.
"""
from typing import Unpack
from collections.abc import Iterator
from torch.utils.data import DataLoader
from trainlib.dataset import BatchedDataset
from trainlib.estimator import EstimatorKwargs
from trainlib.utils.type import LoaderKwargs
class EstimatorDataLoader[B, Kw: EstimatorKwargs]:
"""
Data loaders for estimators.
This class exists to connect batched data from datasets to the expected
representation for estimator methods. Datasets may be developed
independently from a given model structures, and models should be trainable
under any such data. We need a way to ensure the batched groups of items we
get from dataloaders match on a type level, i.e., can be reshaped into the
expected ``Kw`` signature.
Note: batch structure ``B`` cannot be directly inferred from type variables
exposed by ``BatchedDatasets`` (namely ``R`` and ``I``). What's returned by
a data loader wrapping any such dataset can be arbitrary (depending on the
``collate_fn``), with default behavior being fairly consistent under nested
collections but challenging to accurately type.
.. todo::
To log (have changed for Trainer):
- New compact eval pipeline for train/val/auxiliary dataloaders.
Somewhat annoying logic, but handled consistently
- Convergence tracker will dynamically use training loss (early
stopping) when a validation set isn't provided. Same mechanics for
stagnant epochs (although early stopping is generally a little more
nuanced, having a rate-based stopper, b/c train loss generally quite
monotonic). So that's to be updated, plus room for possible model
selection strategies later.
- Logging happens at each batch, but we append to an epoch-indexed list
and later average. There was a bug in the last round of testing that
I didn't pick up where I was just overwriting summaries using the
last seen batch.
- Reworked general dataset/dataloader handling for main train loop, now
accepting objects of this class to bridge estimator and dataset
communication. This cleans up the batch mapping model.
- TODO: implement a version of this that canonically works with the
device passing plus EstimatorKwargs input; this is the last fuzzy bit
I think.
"""
def __init__(
self,
dataset: BatchedDataset,
**dataloader_kwargs: Unpack[LoaderKwargs],
) -> None:
self._dataloader = DataLoader(dataset, **dataloader_kwargs)
def batch_to_est_kwargs(self, batch_data: B) -> Kw:
"""
.. note::
Even if we have a concrete shape for the output kwarg dict for base
estimators (requiring a tensor "inputs" attribute), we don't
presuppose how a given batch object will map into this dict
structure.
return EstimatorKwargs({"inputs":0})
"""
raise NotImplementedError
def __iter__(self) -> Iterator[Kw]:
return map(self.batch_to_est_kwargs, self._dataloader)

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@@ -0,0 +1,12 @@
from trainlib.dataloader import EstimatorDataLoader
from trainlib.utils.text import camel_to_snake
from trainlib.dataloaders.memory import SupervisedDataLoader
_dataloaders = [
SupervisedDataLoader,
]
dataloader_map: dict[str, type[EstimatorDataLoader]] = {
camel_to_snake(_dataloader.__name__): _dataloader
for _dataloader in _dataloaders
}

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@@ -0,0 +1,17 @@
from torch import Tensor
from trainlib.estimator import SupervisedKwargs
from trainlib.dataloader import EstimatorDataLoader
class SupervisedDataLoader(
EstimatorDataLoader[tuple[Tensor, Tensor], SupervisedKwargs]
):
def batch_to_est_kwargs(
self,
batch_data: tuple[Tensor, Tensor]
) -> SupervisedKwargs:
return SupervisedKwargs(
inputs=batch_data[0],
labels=batch_data[1],
)

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@@ -0,0 +1,12 @@
from trainlib.dataset import BatchedDataset
from trainlib.utils.text import camel_to_snake
from trainlib.datasets.memory import RandomXYDataset
_datasets = [
RandomXYDataset,
]
dataset_map: dict[str, type[BatchedDataset]] = {
camel_to_snake(_dataset.__name__): _dataset
for _dataset in _datasets
}

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@@ -73,13 +73,33 @@ class RecordDataset[T: NamedTuple](HomogenousDataset[int, T, T]):
from typing import Unpack
import torch
import torch.nn.functional as F
from torch import Tensor
from torch.utils.data import TensorDataset
from trainlib.domain import SequenceDomain
from trainlib.dataset import TupleDataset, DatasetKwargs
class RandomXYDataset(TupleDataset[Tensor]):
def __init__(
self,
num_samples: int,
input_dim: int,
output_dim: int,
**kwargs: Unpack[DatasetKwargs],
) -> None:
domain = SequenceDomain[tuple[Tensor, Tensor]](
TensorDataset(
torch.randn((num_samples, input_dim)),
torch.randn((num_samples, output_dim))
),
)
super().__init__(domain, **kwargs)
class SlidingWindowDataset(TupleDataset[Tensor]):
def __init__(
self,

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@@ -35,6 +35,10 @@ class EstimatorKwargs(TypedDict):
inputs: Tensor
class SupervisedKwargs(EstimatorKwargs):
labels: Tensor
class Estimator[Kw: EstimatorKwargs](nn.Module):
"""
Estimator base class.
@@ -164,7 +168,7 @@ class Estimator[Kw: EstimatorKwargs](nn.Module):
self,
writer: SummaryWriter,
step: int | None = None,
val: bool = False,
group: str | None = None,
**kwargs: Unpack[Kw],
) -> None:
"""

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@@ -0,0 +1,15 @@
from trainlib.estimator import Estimator
from trainlib.utils.text import camel_to_snake
from trainlib.estimators.mlp import MLP
from trainlib.estimators.rnn import LSTM, ConvGRU, MultiheadLSTM
_estimators: list[type[Estimator]] = [
MLP,
LSTM,
MultiheadLSTM,
ConvGRU,
]
estimator_map: dict[str, type[Estimator]] = {
camel_to_snake(_estimator.__name__): _estimator
for _estimator in _estimators
}

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@@ -21,7 +21,7 @@ class MLPKwargs(EstimatorKwargs):
labels: NotRequired[Tensor]
class MLP[K: MLPKwargs](Estimator[K]):
class MLP[Kw: MLPKwargs](Estimator[Kw]):
"""
Base MLP architecture.
"""
@@ -82,19 +82,19 @@ class MLP[K: MLPKwargs](Estimator[K]):
max=1.0,
)
def forward(self, **kwargs: Unpack[K]) -> tuple[Tensor, ...]:
def forward(self, **kwargs: Unpack[Kw]) -> tuple[Tensor, ...]:
inputs = kwargs["inputs"]
x = self._net(inputs)
return (x,)
def loss(self, **kwargs: Unpack[K]) -> Generator[Tensor]:
def loss(self, **kwargs: Unpack[Kw]) -> Generator[Tensor]:
predictions = self(**kwargs)[0]
labels = kwargs["labels"]
yield F.mse_loss(predictions, labels)
def metrics(self, **kwargs: Unpack[K]) -> dict[str, float]:
def metrics(self, **kwargs: Unpack[Kw]) -> dict[str, float]:
with torch.no_grad():
loss = next(self.loss(**kwargs)).item()
@@ -103,8 +103,7 @@ class MLP[K: MLPKwargs](Estimator[K]):
mae = F.l1_loss(predictions, labels).item()
return {
"loss": loss,
"mse": loss,
# "mse": loss,
"mae": mae,
"grad_norm": get_grad_norm(self)
}
@@ -136,8 +135,8 @@ class MLP[K: MLPKwargs](Estimator[K]):
self,
writer: SummaryWriter,
step: int | None = None,
val: bool = False,
**kwargs: Unpack[K],
group: str | None = None,
**kwargs: Unpack[Kw],
) -> None:
return None

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@@ -21,7 +21,7 @@ class RNNKwargs(EstimatorKwargs):
labels: NotRequired[Tensor]
class LSTM[K: RNNKwargs](Estimator[K]):
class LSTM[Kw: RNNKwargs](Estimator[Kw]):
"""
Base RNN architecture.
"""
@@ -85,7 +85,7 @@ class LSTM[K: RNNKwargs](Estimator[K]):
max=1.0,
)
def forward(self, **kwargs: Unpack[K]) -> tuple[Tensor, ...]:
def forward(self, **kwargs: Unpack[Kw]) -> tuple[Tensor, ...]:
inputs = kwargs["inputs"]
# data shaped (B, C, T); map to (B, T, C)
@@ -97,13 +97,13 @@ class LSTM[K: RNNKwargs](Estimator[K]):
return z[:, -1, :], hidden
def loss(self, **kwargs: Unpack[K]) -> Generator[Tensor]:
def loss(self, **kwargs: Unpack[Kw]) -> Generator[Tensor]:
predictions = self(**kwargs)[0]
labels = kwargs["labels"]
yield F.mse_loss(predictions, labels)
def metrics(self, **kwargs: Unpack[K]) -> dict[str, float]:
def metrics(self, **kwargs: Unpack[Kw]) -> dict[str, float]:
with torch.no_grad():
loss = next(self.loss(**kwargs)).item()
@@ -112,7 +112,7 @@ class LSTM[K: RNNKwargs](Estimator[K]):
mae = F.l1_loss(predictions, labels).item()
return {
"loss": loss,
# "loss": loss,
"mse": loss,
"mae": mae,
"grad_norm": get_grad_norm(self)
@@ -145,8 +145,8 @@ class LSTM[K: RNNKwargs](Estimator[K]):
self,
writer: SummaryWriter,
step: int | None = None,
val: bool = False,
**kwargs: Unpack[K],
group: str | None = None,
**kwargs: Unpack[Kw],
) -> None:
return None
@@ -165,7 +165,7 @@ class MultiheadLSTMKwargs(EstimatorKwargs):
auxiliary: NotRequired[Tensor]
class MultiheadLSTM[K: MultiheadLSTMKwargs](Estimator[K]):
class MultiheadLSTM[Kw: MultiheadLSTMKwargs](Estimator[Kw]):
def __init__(
self,
input_dim: int,
@@ -223,7 +223,7 @@ class MultiheadLSTM[K: MultiheadLSTMKwargs](Estimator[K]):
max=1.0,
)
def forward(self, **kwargs: Unpack[K]) -> tuple[Tensor, ...]:
def forward(self, **kwargs: Unpack[Kw]) -> tuple[Tensor, ...]:
inputs = kwargs["inputs"]
# data shaped (B, C, T); map to (B, T, C)
@@ -237,7 +237,7 @@ class MultiheadLSTM[K: MultiheadLSTMKwargs](Estimator[K]):
return z[:, -1, :], zs[:, -1, :]
def loss(self, **kwargs: Unpack[K]) -> Generator[Tensor]:
def loss(self, **kwargs: Unpack[Kw]) -> Generator[Tensor]:
pred, pred_aux = self(**kwargs)
labels = kwargs["labels"]
aux_labels = kwargs.get("auxiliary")
@@ -247,12 +247,8 @@ class MultiheadLSTM[K: MultiheadLSTMKwargs](Estimator[K]):
else:
yield F.mse_loss(pred, labels) + F.mse_loss(pred_aux, aux_labels)
def metrics(self, **kwargs: Unpack[K]) -> dict[str, float]:
with torch.no_grad():
loss = next(self.loss(**kwargs)).item()
def metrics(self, **kwargs: Unpack[Kw]) -> dict[str, float]:
return {
"loss": loss,
"grad_norm": get_grad_norm(self)
}
@@ -283,8 +279,8 @@ class MultiheadLSTM[K: MultiheadLSTMKwargs](Estimator[K]):
self,
writer: SummaryWriter,
step: int | None = None,
val: bool = False,
**kwargs: Unpack[K],
group: str | None = None,
**kwargs: Unpack[Kw],
) -> None:
return None
@@ -297,7 +293,7 @@ class MultiheadLSTM[K: MultiheadLSTMKwargs](Estimator[K]):
logger.info(f"| > {self.output_dim=}")
class ConvGRU[K: RNNKwargs](Estimator[K]):
class ConvGRU[Kw: RNNKwargs](Estimator[Kw]):
"""
Base recurrent convolutional architecture.
@@ -408,7 +404,7 @@ class ConvGRU[K: RNNKwargs](Estimator[K]):
max=1.0,
)
def forward(self, **kwargs: Unpack[K]) -> tuple[Tensor, ...]:
def forward(self, **kwargs: Unpack[Kw]) -> tuple[Tensor, ...]:
inputs = kwargs["inputs"]
# embedding shaped (B, C, T)
@@ -434,7 +430,7 @@ class ConvGRU[K: RNNKwargs](Estimator[K]):
return (z,)
def loss(self, **kwargs: Unpack[K]) -> Generator[Tensor]:
def loss(self, **kwargs: Unpack[Kw]) -> Generator[Tensor]:
predictions = self(**kwargs)[0]
labels = kwargs["labels"]
@@ -443,7 +439,7 @@ class ConvGRU[K: RNNKwargs](Estimator[K]):
yield F.mse_loss(predictions, labels, reduction="mean")
def metrics(self, **kwargs: Unpack[K]) -> dict[str, float]:
def metrics(self, **kwargs: Unpack[Kw]) -> dict[str, float]:
with torch.no_grad():
loss = next(self.loss(**kwargs)).item()
@@ -452,7 +448,6 @@ class ConvGRU[K: RNNKwargs](Estimator[K]):
mae = F.l1_loss(predictions, labels).item()
return {
"loss": loss,
"mse": loss,
"mae": mae,
"grad_norm": get_grad_norm(self)
@@ -485,8 +480,8 @@ class ConvGRU[K: RNNKwargs](Estimator[K]):
self,
writer: SummaryWriter,
step: int | None = None,
val: bool = False,
**kwargs: Unpack[K],
group: str | None = None,
**kwargs: Unpack[Kw],
) -> None:
return None

528
trainlib/plotter.py Normal file
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@@ -0,0 +1,528 @@
from typing import Any
from collections.abc import Callable
import numpy as np
import torch
import matplotlib.pyplot as plt
from torch import Tensor
from trainlib.trainer import Trainer
from trainlib.estimator import EstimatorKwargs
from trainlib.dataloader import EstimatorDataLoader
from trainlib.utils.type import AxesArray, SubplotsKwargs
type SubplotFn = Callable[[plt.Axes, int, Tensor, Tensor], None]
type ContextFn = Callable[[plt.Axes, str], None]
class Plotter[Kw: EstimatorKwargs]:
"""
TODOs:
- best fit lines for plots and residuals (compare to ideal lines in each
case)
- show val options across columns; preview how val is changing across
natural training, and what the best will look (so plot like uniform
intervals broken over the training epochs at 0, 50, 100, 150, ... and
highlight the best one, even if that's not actually the single best
epoch)
- Implement data and dimension limits; in the instance dataloaders have
huge numbers of samples or labels are high-dimensional
"""
def __init__(
self,
trainer: Trainer[Any, Kw],
dataloaders: list[EstimatorDataLoader[Any, Kw]],
kw_to_actual: Callable[[Kw], Tensor],
dataloader_labels: list[str] | None = None,
) -> None:
self.trainer = trainer
self.dataloaders = dataloaders
self.dataloader_labels = (
dataloader_labels or list(map(str, range(1, len(dataloaders)+1)))
)
self.kw_to_actual = kw_to_actual
self._outputs: list[list[Tensor]] | None = None
self._metrics: list[list[dict[str, float]]] | None = None
self._data_tuples = None
@property
def data_tuples(self) -> list[tuple[Tensor, Tensor, str]]:
"""
Produce data items; to be cached. Zip later with axes
"""
self.trainer.estimator.eval()
if self._data_tuples is not None:
return self._data_tuples
data_tuples = []
for i, loader in enumerate(self.dataloaders):
label = self.dataloader_labels[i]
actual = torch.cat([
self.kw_to_actual(batch_kwargs).detach().cpu()
for batch_kwargs in loader
])
output = torch.cat([
self.trainer.estimator(**batch_kwargs)[0].detach().cpu()
for batch_kwargs in loader
])
data_tuples.append((actual, output, label))
self._data_tuples = data_tuples
return self._data_tuples
def get_transposed_handles_labels(
self,
ax: plt.Axes
) -> tuple[list, list]:
# transpose legend layout for more natural view
handles, labels = ax.get_legend_handles_labels()
handles = handles[::2] + handles[1::2]
labels = labels[::2] + labels[1::2]
return handles, labels
def _lstsq_dim(
self,
dim_actual: Tensor,
dim_output: Tensor
) -> tuple[Tensor, Tensor]:
A = torch.stack(
[dim_actual, torch.ones_like(dim_actual)],
dim=1
)
m, b = torch.linalg.lstsq(A, dim_output).solution
return m, b
def _prepare_figure_kwargs(
self,
rows: int,
cols: int,
row_size: int | float = 2,
col_size: int | float = 4,
figure_kwargs: SubplotsKwargs | None = None,
) -> SubplotsKwargs:
"""
"""
default_figure_kwargs = {
"sharex": True,
"figsize": (col_size*cols, row_size*rows),
}
figure_kwargs = {
**default_figure_kwargs,
**(figure_kwargs or {}),
}
return figure_kwargs
def _prepare_subplot_kwargs(
self,
subplot_kwargs: dict | None = None,
) -> dict:
"""
"""
default_subplot_kwargs = {}
subplot_kwargs = {
**default_subplot_kwargs,
**(subplot_kwargs or {}),
}
return subplot_kwargs
def _prepare_gof_kwargs(
self,
gof_kwargs: dict | None = None,
) -> dict:
"""
"""
default_gof_kwargs = {
"alpha": 0.5
}
gof_kwargs = {
**default_gof_kwargs,
**(gof_kwargs or {}),
}
return gof_kwargs
def _create_subplots(
self,
rows: int,
cols: int,
row_size: int | float = 2,
col_size: int | float = 4,
figure_kwargs: SubplotsKwargs | None = None,
) -> tuple[plt.Figure, AxesArray]:
"""
"""
figure_kwargs: SubplotsKwargs = self._prepare_figure_kwargs(
rows,
cols,
row_size=row_size,
col_size=col_size,
figure_kwargs=figure_kwargs,
)
fig, axes = plt.subplots(
rows,
cols,
squeeze=False,
**figure_kwargs,
) # ty:ignore[no-matching-overload]
return fig, axes
def _plot_base(
self,
subplot_fn: SubplotFn,
context_fn: ContextFn,
row_size: int | float = 2,
col_size: int | float = 4,
norm_samples: bool = False,
combine_dims: bool = True,
figure_kwargs: SubplotsKwargs | None = None,
) -> tuple[plt.Figure, AxesArray]:
"""
Note: transform samples in dataloader definitions beforehand if you
want to change data
.. todo::
Merge in logic from general diagnostics, allowing collapse from
either dim and transposing.
Later: multi-trial error bars, or at least the ability to pass that
downstream
Parameters:
row_size:
col_size:
figure_kwargs:
subplot_kwargs:
gof_kwargs:
"""
ndims = self.data_tuples[0][0].size(-1)
fig, axes = self._create_subplots(
rows=len(self.dataloaders),
cols=1 if (norm_samples or combine_dims) else ndims,
row_size=row_size,
col_size=col_size,
figure_kwargs=figure_kwargs,
)
for axes_row, data_tuple in zip(axes, self.data_tuples, strict=True):
actual, output, loader_label = data_tuple
if norm_samples:
actual = actual.norm(dim=1, keepdim=True)
output = output.norm(dim=1, keepdim=True)
for dim in range(ndims):
ax = axes_row[0 if combine_dims else dim]
subplot_fn(ax, dim, actual, output)
add_plot_context = (
norm_samples # dim=0 implicit b/c we break
or not combine_dims # add to every subplot across grid
or combine_dims and dim == ndims-1 # wait for last dim
)
# always exec plot logic if not combining, o/w exec just once
if add_plot_context:
context_fn(ax, loader_label)
# transpose legend layout for more natural view
if norm_samples or not combine_dims:
ax.legend()
else:
handles, labels = self.get_transposed_handles_labels(ax)
ax.legend(handles, labels, ncols=2)
# break dimension loop if collapsed by norm
if norm_samples:
break
return fig, axes
# def plot_ordered(...): ...
# """
# Simple ordered view of output dimensions, with actual and output
# overlaid.
# """
def plot_actual_output(
self,
row_size: int | float = 2,
col_size: int | float = 4,
norm_samples: bool = False,
combine_dims: bool = True,
figure_kwargs: SubplotsKwargs | None = None,
subplot_kwargs: dict | None = None,
gof_kwargs: dict | None = None,
) -> tuple[plt.Figure, AxesArray]:
"""
Plot residual distribution.
"""
subplot_kwargs = self._prepare_subplot_kwargs(subplot_kwargs)
gof_kwargs = self._prepare_gof_kwargs(gof_kwargs)
colors = plt.rcParams["axes.prop_cycle"].by_key()["color"]
def subplot_fn(
ax: plt.Axes, dim: int, actual: Tensor, output: Tensor
) -> None:
dim_color = colors[dim % len(colors)]
group_name = "norm" if norm_samples else f"$d_{dim}$"
dim_actual = actual[:, dim]
dim_output = output[:, dim]
ax.scatter(
dim_actual, dim_output,
color=dim_color,
label=group_name,
**subplot_kwargs,
)
# plot goodness of fit line
m, b = self._lstsq_dim(dim_actual, dim_output)
ax.plot(
dim_actual, m * dim_actual + b,
color=dim_color,
label=f"GoF {group_name}",
**gof_kwargs,
)
def context_fn(ax: plt.Axes, loader_label: str) -> None:
# plot perfect prediction reference line, y=x
ax.plot(
[0, 1], [0, 1],
transform=ax.transAxes,
c="black",
alpha=0.2,
)
ax.set_title(
f"[{loader_label}] True labels vs Predictions"
)
ax.set_xlabel("actual")
ax.set_ylabel("output")
return self._plot_base(
subplot_fn, context_fn,
row_size=row_size,
col_size=col_size,
norm_samples=norm_samples,
combine_dims=combine_dims,
figure_kwargs=figure_kwargs,
)
def plot_actual_output_residual(
self,
row_size: int | float = 2,
col_size: int | float = 4,
order_residuals: bool = False,
norm_samples: bool = False,
combine_dims: bool = True,
figure_kwargs: SubplotsKwargs | None = None,
subplot_kwargs: dict | None = None,
gof_kwargs: dict | None = None,
) -> tuple[plt.Figure, AxesArray]:
"""
Plot prediction residuals.
"""
subplot_kwargs = self._prepare_subplot_kwargs(subplot_kwargs)
gof_kwargs = self._prepare_gof_kwargs(gof_kwargs)
colors = plt.rcParams["axes.prop_cycle"].by_key()["color"]
def subplot_fn(
ax: plt.Axes, dim: int, actual: Tensor, output: Tensor
) -> None:
dim_color = colors[dim % len(colors)]
group_name = "norm" if norm_samples else f"$d_{dim}$"
dim_actual = actual[:, dim]
dim_output = output[:, dim]
residuals = dim_actual - dim_output
X, Y = dim_actual, residuals
if order_residuals:
X = range(1, residuals.size(0)+1)
Y = residuals[residuals.argsort()]
ax.scatter(
X, Y,
color=dim_color,
label=group_name,
**subplot_kwargs,
)
# plot goodness of fit line
if not order_residuals:
m, b = self._lstsq_dim(dim_actual, residuals)
ax.plot(
dim_actual, m * dim_actual + b,
color=dim_color,
label=f"GoF {group_name}",
**gof_kwargs,
)
def context_fn(ax: plt.Axes, loader_label: str) -> None:
# compare residuals to y=0
ax.axhline(y=0, c="black", alpha=0.2)
ax.set_title(f"[{loader_label}] Prediction residuals")
ax.set_xlabel("actual")
ax.set_ylabel("residual")
return self._plot_base(
subplot_fn, context_fn,
row_size=row_size,
col_size=col_size,
norm_samples=norm_samples,
combine_dims=combine_dims,
figure_kwargs=figure_kwargs,
)
def plot_actual_output_residual_dist(
self,
row_size: int | float = 2,
col_size: int | float = 4,
norm_samples: bool = False,
combine_dims: bool = True,
figure_kwargs: SubplotsKwargs | None = None,
subplot_kwargs: dict | None = None,
gof_kwargs: dict | None = None,
) -> tuple[plt.Figure, AxesArray]:
"""
Plot residual distribution.
"""
subplot_kwargs = self._prepare_subplot_kwargs(subplot_kwargs)
gof_kwargs = self._prepare_gof_kwargs(gof_kwargs)
colors = plt.rcParams["axes.prop_cycle"].by_key()["color"]
def subplot_fn(
ax: plt.Axes, dim: int, actual: Tensor, output: Tensor
) -> None:
dim_color = colors[dim % len(colors)]
group_name = "norm" if norm_samples else f"$d_{dim}$"
dim_actual = actual[:, dim]
dim_output = output[:, dim]
N = dim_actual.size(0)
residuals = dim_actual - dim_output
_, _, patches = ax.hist(
residuals.abs(),
bins=int(np.sqrt(N)),
density=True,
alpha=0.3,
color=dim_color,
label=group_name,
**subplot_kwargs
)
mu = residuals.abs().mean().item()
ax.axvline(mu, linestyle=":", c=dim_color, label=f"$\\mu_{dim}$")
def context_fn(ax: plt.Axes, loader_label: str) -> None:
ax.set_title(f"[{loader_label}] Residual distribution")
ax.set_xlabel("actual")
ax.set_ylabel("residual (density)")
return self._plot_base(
subplot_fn, context_fn,
row_size=row_size,
col_size=col_size,
norm_samples=norm_samples,
combine_dims=combine_dims,
figure_kwargs=figure_kwargs,
)
def estimator_diagnostic(
self,
row_size: int | float = 2,
col_size: int | float = 4,
session_name: str | None = None,
combine_groups: bool = False,
combine_metrics: bool = False,
transpose_layout: bool = False,
figure_kwargs: SubplotsKwargs | None = None,
) -> tuple[plt.Figure, AxesArray]:
session_map = self.trainer._event_log
session_name = session_name or next(iter(session_map))
groups = session_map[session_name]
num_metrics = len(groups[next(iter(groups))])
# colors = plt.rcParams["axes.prop_cycle"].by_key()["color"]
rows = 1 if combine_groups else len(groups)
cols = 1 if combine_metrics else num_metrics
if transpose_layout:
rows, cols = cols, rows
fig, axes = self._create_subplots(
rows=rows,
cols=cols,
row_size=row_size,
col_size=col_size,
figure_kwargs=figure_kwargs,
)
if transpose_layout:
axes = axes.T
for i, group_name in enumerate(groups):
axes_row = axes[0 if combine_groups else i]
group_metrics = groups[group_name]
for j, metric_name in enumerate(group_metrics):
ax = axes_row[0 if combine_metrics else j]
metric_dict = group_metrics[metric_name]
metric_data = np.array([
(k, np.mean(v)) for k, v in metric_dict.items()
])
if combine_groups and combine_metrics:
label = f"{group_name}-{metric_name}"
title_prefix = "all"
elif combine_groups:
label = group_name
title_prefix = metric_name
# elif combine_metrics:
else:
label = metric_name
title_prefix = group_name
# else:
# label = ""
# title_prefix = f"{group_name},{metric_name}"
ax.plot(
metric_data[:, 0],
metric_data[:, 1],
label=label,
# color=colors[j],
)
ax.set_title(f"[{title_prefix}] Metrics over epochs")
ax.set_xlabel("epoch")
ax.set_ylabel("value")
ax.legend()
return fig, axes

View File

@@ -1,5 +1,15 @@
"""
Core interface for training ``Estimators`` with ``Datasets``
.. admonition:: Design of preview ``get_dataloaders()``
Note how much this method is doing, and the positivity in letting that be
more explicit elsewhere. The assignment of transforms to datasets before
wrapping as loaders is chief among these items, alongside the balancing and
splitting; I think those are hamfisted here to make it work with the old
setup, but I generally it's not consistent with the name "get dataloaders"
(i.e., and also balance and split and set transforms)
"""
import os
@@ -7,48 +17,42 @@ import time
import logging
from io import BytesIO
from copy import deepcopy
from typing import Any, Self
from typing import Any
from pathlib import Path
from collections import defaultdict
from collections.abc import Callable
import torch
from tqdm import tqdm
from torch import cuda, Tensor
from torch.optim import Optimizer
from torch.nn.utils import clip_grad_norm_
from torch.utils.data import Dataset, DataLoader
from torch.utils.tensorboard import SummaryWriter
from trainlib.dataset import BatchedDataset
from trainlib.estimator import Estimator, EstimatorKwargs
from trainlib.transform import Transform
from trainlib.utils.type import (
SplitKwargs,
LoaderKwargs,
BalanceKwargs,
)
from trainlib.utils.map import nested_defaultdict
from trainlib.dataloader import EstimatorDataLoader
from trainlib.utils.module import ModelWrapper
from trainlib.utils.session import ensure_same_device
logger: logging.Logger = logging.getLogger(__name__)
class Trainer[I, K: EstimatorKwargs]:
class Trainer[I, Kw: EstimatorKwargs]:
"""
Training interface for optimizing parameters of ``Estimators`` with
``Datasets``.
This class is generic to a dataset item type ``I`` and an estimator kwarg
type ``K``. These are the two primary components ``Trainer`` objects need
type ``Kw``. These are the two primary components ``Trainer`` objects need
to coordinate: they ultimately rely on a provided map to ensure data items
(type ``I``) from a dataset are appropriately routed as inputs to key
estimator methods (like ``forward()`` and ``loss()``), which accept inputs
of type ``K``.
of type ``Kw``.
"""
def __init__(
self,
estimator: Estimator[K],
estimator: Estimator[Kw],
device: str | None = None,
chkpt_dir: str = "chkpt/",
tblog_dir: str = "tblog/",
@@ -93,6 +97,7 @@ class Trainer[I, K: EstimatorKwargs]:
self.estimator = estimator
self.estimator.to(self.device)
self._event_log = nested_defaultdict(4, list)
self.chkpt_dir = Path(chkpt_dir).resolve()
self.tblog_dir = Path(tblog_dir).resolve()
@@ -104,64 +109,40 @@ class Trainer[I, K: EstimatorKwargs]:
Set initial tracking parameters for the primary training loop.
"""
self._step: int = 0
self._epoch: int = 0
self._summary: dict[str, list[tuple[float, int]]] = defaultdict(list)
self._summary = defaultdict(lambda: defaultdict(list))
self._val_loss = float("inf")
self._best_val_loss = float("inf")
self._conv_loss = float("inf")
self._best_conv_loss = float("inf")
self._stagnant_epochs = 0
self._best_model_state_dict: dict[str, Any] = {}
def _train_epoch(
self,
train_loader: DataLoader,
batch_estimator_map: Callable[[I, Self], K],
loader: EstimatorDataLoader[Any, Kw],
optimizers: tuple[Optimizer, ...],
writer: SummaryWriter,
max_grad_norm: float | None = None,
progress_bar: tqdm | None = None,
) -> list[float]:
"""
Train the estimator for a single epoch.
"""
train_loss_sums = []
loss_sums = []
self.estimator.train()
with tqdm(train_loader, unit="batch") as train_epoch:
for i, batch_data in enumerate(train_epoch):
est_kwargs = batch_estimator_map(batch_data, self)
inputs = est_kwargs["inputs"]
for i, batch_kwargs in enumerate(loader):
batch_kwargs = ensure_same_device(batch_kwargs, self.device)
losses = self.estimator.loss(**batch_kwargs)
# one-time logging
if self._step == 0:
writer.add_graph(
ModelWrapper(self.estimator),
est_kwargs
)
for o_idx, (loss, optimizer) in enumerate(
zip(losses, optimizers, strict=True)
):
if len(loss_sums) <= o_idx:
loss_sums.append(0.0)
loss_sums[o_idx] += loss.item()
# once-per-epoch logging
if i == 0:
self.estimator.epoch_write(
writer,
step=self._step,
val=False,
**est_kwargs
)
train_losses = self.estimator.loss(**est_kwargs)
train_loss_items = []
for o_idx, optimizer in enumerate(optimizers):
optimizer.zero_grad()
train_loss = next(train_losses)
if len(train_loss_sums) <= o_idx:
train_loss_sums.append(0.0)
train_loss_item = train_loss.item()
train_loss_sums[o_idx] += train_loss_item
train_loss_items.append(train_loss_item)
train_loss.backward()
loss.backward()
# clip gradients for optimizer's parameters
if max_grad_norm is not None:
@@ -172,117 +153,194 @@ class Trainer[I, K: EstimatorKwargs]:
optimizer.step()
self._step += len(inputs)
# set loop loss to running average (reducing if multi-loss)
loss_avg = sum(loss_sums) / (len(loss_sums)*(i+1))
for train_loss_item, train_loss_sum in zip(
train_loss_items,
train_loss_sums,
strict=True,
):
train_epoch.set_postfix(loss=f"{train_loss_sum/(i+1):8.2f}")
self._add_summary_item("train_loss", train_loss_item)
estimator_metrics = self.estimator.metrics(**est_kwargs)
for metric_name, metric_value in estimator_metrics.items():
self._add_summary_item(
f"train_{metric_name}",
metric_value
if progress_bar:
progress_bar.update(1)
progress_bar.set_postfix(
epoch=self._epoch,
mode="opt",
data="train",
loss=f"{loss_avg:8.2f}",
)
# step estimator hyperparam schedules
self.estimator.epoch_step()
for li, train_loss_sum in enumerate(train_loss_sums):
self._add_summary_item(
f"train_loss{li}_epoch", train_loss_sum / len(train_loader)
)
return loss_sums
return train_loss_sums
def _val_epoch(
def _eval_epoch(
self,
val_loader: DataLoader,
batch_estimator_map: Callable[[I, Self], K],
optimizers: tuple[Optimizer, ...],
writer: SummaryWriter,
loader: EstimatorDataLoader[Any, Kw],
label: str,
progress_bar: tqdm | None = None,
) -> list[float]:
"""
Perform and record validation scores for a single epoch.
.. On summary writers::
See the similarly titled note for ``_train_epoch()`` for general
remarks about optimizers and how we're recording losses/metrics.
The same mostly applies here in the validation setting, but we
crucially aren't stepping forward ``_step`` between batches. This
means that, even though we're writing losses and metrics once for
each val batch, those values are simply piling up under the same
summary item name. This is consistent with how we report training
items: the model isn't changing across val batches, so these don't
get plotted at different step points (which might be interpreted as
performance along model progression when it's actually variation
across batches). Currently, this "piling" means we actually write
batch values to the same event name at the same step rather than
manually averaging beforehand; we defer the handling to TB, and
although that may technically be discouraged, the val plots render
collections effectively as a vertical line between the min and max
value (which I find to be a satisfactory way to view cross-batch
variation during each val epoch).
"""
val_loss_sums = []
loss_sums = []
self.estimator.eval()
with tqdm(val_loader, unit="batch") as val_epoch:
for i, batch_data in enumerate(val_epoch):
est_kwargs = batch_estimator_map(batch_data, self)
for i, batch_kwargs in enumerate(loader):
batch_kwargs = ensure_same_device(batch_kwargs, self.device)
losses = self.estimator.loss(**batch_kwargs)
# once-per-session logging
if self._epoch == 0 and i == 0:
self._writer.add_graph(
ModelWrapper(self.estimator), batch_kwargs
)
# once-per-epoch logging
if i == 0:
self.estimator.epoch_write(
writer,
step=self._step,
val=True,
**est_kwargs
self._writer,
step=self._epoch,
group=label,
**batch_kwargs
)
val_losses = self.estimator.loss(**est_kwargs)
val_loss_items = []
for o_idx in range(len(optimizers)):
val_loss = next(val_losses)
loss_items = []
for o_idx, loss in enumerate(losses):
if len(loss_sums) <= o_idx:
loss_sums.append(0.0)
if len(val_loss_sums) <= o_idx:
val_loss_sums.append(0.0)
loss_item = loss.item()
loss_sums[o_idx] += loss_item
loss_items.append(loss_item)
val_loss_item = val_loss.item()
val_loss_sums[o_idx] += val_loss_item
val_loss_items.append(val_loss_item)
# set loop loss to running average (reducing if multi-loss)
loss_avg = sum(loss_sums) / (len(loss_sums)*(i+1))
for val_loss_item, val_loss_sum in zip(
val_loss_items,
val_loss_sums,
strict=True,
):
val_epoch.set_postfix(loss=f"{val_loss_sum/(i+1):8.2f}")
self._add_summary_item("val_loss", val_loss_item)
if progress_bar:
progress_bar.update(1)
progress_bar.set_postfix(
epoch=self._epoch,
mode="eval",
data=label,
loss=f"{loss_avg:8.2f}",
)
estimator_metrics = self.estimator.metrics(**est_kwargs)
# log individual loss terms after each batch
for o_idx, loss_item in enumerate(loss_items):
self._log_event(label, f"loss_{o_idx}", loss_item)
# log metrics for batch
estimator_metrics = self.estimator.metrics(**batch_kwargs)
for metric_name, metric_value in estimator_metrics.items():
self._add_summary_item(f"val_{metric_name}", metric_value)
self._log_event(label, metric_name, metric_value)
for li, val_loss_sum in enumerate(val_loss_sums):
self._add_summary_item(
f"val_loss{li}_epoch", val_loss_sum / len(val_loader)
)
avg_losses = [loss_sum / (i+1) for loss_sum in loss_sums]
# convergence of multiple losses may be ambiguous
self._val_loss = sum(val_loss_sums) / len(val_loader)
return avg_losses
return val_loss_sums
def train[B](
def _eval_loaders(
self,
dataset: BatchedDataset[..., ..., I],
batch_estimator_map: Callable[[B, Self], K],
train_loader: EstimatorDataLoader[Any, Kw],
val_loader: EstimatorDataLoader[Any, Kw] | None = None,
aux_loaders: list[EstimatorDataLoader[Any, Kw]] | None = None,
progress_bar: tqdm | None = None,
) -> tuple[list[float], list[float] | None, *list[float]]:
"""
Evaluate estimator over each provided dataloader.
This streamlines the general train/val/etc evaluation pipeline during
training. This triggers logging of summary items, TensorBoard writes,
etc, and is therefore exclusively intended for use inside the primary
``train()`` loop.
If looking to use this method publicly, you should instead work with
individual dataloaders and call helper methods like
``get_batch_outputs()`` or ``get_batch_metrics()`` while iterating over
batches. This will have no internal side effects and provides much more
information (just aggregated losses are provided here).
.. admonition:: On epoch counting
Epoch counts start at 0 to allow for a sensible place to benchmark
the initial (potentially untrained/pre-trained) model before any
training data is seen. In the train loop, we increment the epoch
immediately, and all logging happens under the epoch value that's
set at the start of the iteration (rather than incrementing at the
end). Before beginning an additional training iteration, the
convergence condition in the ``while`` is effectively checking what
happened during the last epoch (the counter has not yet been
incremented); if no convergence, we begin again. (This is only
being noted because the epoch counting was previously quite
different: indexing started at ``1``, we incremented at the end of
the loop, and we didn't evaluate the model before the loop began.
This affects how we interpret plots and TensorBoard records, for
instance, so it's useful to spell out the approach clearly
somewhere given the many possible design choices here.)
"""
train_loss = self._eval_epoch(train_loader, "train", progress_bar)
val_loss = None
if val_loader is not None:
val_loss = self._eval_epoch(val_loader, "val", progress_bar)
aux_loaders = aux_loaders or []
aux_losses = [
self._eval_epoch(aux_loader, f"aux{i}", progress_bar)
for i, aux_loader in enumerate(aux_loaders)
]
return train_loss, val_loss, *aux_losses
def train(
self,
train_loader: EstimatorDataLoader[Any, Kw],
val_loader: EstimatorDataLoader[Any, Kw] | None = None,
aux_loaders: list[EstimatorDataLoader[Any, Kw]] | None = None,
*,
lr: float = 1e-3,
eps: float = 1e-8,
max_grad_norm: float | None = None,
max_epochs: int = 10,
stop_after_epochs: int = 5,
batch_size: int = 256,
val_frac: float = 0.1,
train_transform: Transform | None = None,
val_transform: Transform | None = None,
dataset_split_kwargs: SplitKwargs | None = None,
dataset_balance_kwargs: BalanceKwargs | None = None,
dataloader_kwargs: LoaderKwargs | None = None,
summarize_every: int = 1,
chkpt_every: int = 1,
resume_latest: bool = False,
session_name: str | None = None,
summary_writer: SummaryWriter | None = None,
) -> Estimator:
"""
TODO: consider making the dataloader ``collate_fn`` an explicit
parameter with a type signature that reflects ``B``, connecting the
``batch_estimator_map`` somewhere
.. todo::
- consider making the dataloader ``collate_fn`` an explicit
parameter with a type signature that reflects ``B``, connecting
the ``batch_estimator_map`` somewhere. Might also re-type a
``DataLoader`` in-house to allow a generic around ``B``
- Rework the validation specification. Accept something like a
"validate_with" parameter, or perhaps just move entirely to
accepting a dataloader list, label list. You might then also need
a "train_with," and you could set up sensible defaults so you
basically have the same interaction as now. The "problem" is you
always need a train set, and there's some clearly dependent logic
on a val set, but you don't *need* val, so this should be
slightly reworked (and the more general, *probably* the better in
this case, given I want to plug into the Plotter with possibly
several purely eval sets over the model training lifetime).
Note: this method attempts to implement a general scheme for passing
needed items to the estimator's loss function from the dataloader. The
@@ -324,10 +382,47 @@ class Trainer[I, K: EstimatorKwargs]:
This function should map from batches - which *may* be item
shaped, i.e., have an ``I`` skeleton, even if stacked items may be
different on the inside - into estimator keyword arguments (type
``K``). Collation behavior from a DataLoader (which can be
``Kw``). Collation behavior from a DataLoader (which can be
customized) doesn't consistently yield a known type shape, however,
so it's not appropriate to use ``I`` as the callable param type.
.. admonition:: On session management
This method works around an implicit notion of training sessions.
Estimators are set during instantiation and effectively coupled
with ``Trainer`` instances, but datasets can be supplied
dynamically here. One can, for instance, run under one condition
(specific dataset, number of epochs, etc), then resume later under
another. Relevant details persist across calls: the estimator is
still attached, best val scores stowed, current epoch tracked. By
default, new ``session_names`` are always generated, but you can
write to the same TB location if you using the same
``session_name`` across calls; that's about as close to a direct
training resume as you could want.
If restarting training on new datasets, including short
fine-tuning on training-plus-validation data, it's often sensible
to call ``.reset()`` between ``.train()`` calls. While the same
estimator will be used, tracked variables will be wiped; subsequent
model updates take place under a fresh epoch, no val losses, and be
logged under a separate TB session. This is the general approach to
"piecemeal" training, i.e., incremental model updates under varying
conditions (often just data changes).
.. warning::
Validation convergence when there are multiple losses may be
ambiguous. These are cases where certain parameter sets are
optimized independently; the sum over these losses may not reflect
expected or consistent behavior. For instance, we may record a low
cumulative loss early with a small 1st loss and moderate 2nd loss,
while later encountering a moderate 1st lost and small 2nd loss. We
might prefer the latter case, while ``_converged()`` will stick to
the former -- we need to consider possible weighting across losses,
or storing possibly several best models (e.g., for each loss, the
model that scores best, plus the one scoring best cumulatively,
etc).
Parameters:
dataset: dataset to train the estimator
batch_estimator_map: function mapping from batch data to expected
@@ -348,89 +443,63 @@ class Trainer[I, K: EstimatorKwargs]:
dataset
val_split_frac: fraction of dataset to use for validation
chkpt_every: how often model checkpoints should be saved
resume_latest: resume training from the latest available checkpoint
in the `chkpt_dir`
"""
logger.info("> Begin train loop:")
logger.info(f"| > {lr=}")
logger.info(f"| > {eps=}")
logger.info(f"| > {max_epochs=}")
logger.info(f"| > {batch_size=}")
logger.info(f"| > {val_frac=}")
logger.info(f"| > {chkpt_every=}")
logger.info(f"| > {resume_latest=}")
logger.info(f"| > with device: {self.device}")
logger.info(f"| > core count: {os.cpu_count()}")
writer: SummaryWriter
dir_prefix = str(int(time.time()))
if summary_writer is None:
writer = SummaryWriter(f"{self.tblog_dir}")
else:
writer = summary_writer
train_loader, val_loader = self.get_dataloaders(
dataset,
batch_size,
val_frac=val_frac,
train_transform=train_transform,
val_transform=val_transform,
dataset_split_kwargs=dataset_split_kwargs,
dataset_balance_kwargs=dataset_balance_kwargs,
dataloader_kwargs=dataloader_kwargs,
)
self._session_name = session_name or str(int(time.time()))
tblog_path = Path(self.tblog_dir, self._session_name)
self._writer = summary_writer or SummaryWriter(f"{tblog_path}")
progress_bar = tqdm(train_loader, unit="batch")
# evaluate model on dataloaders once before training starts
self._eval_loaders(train_loader, val_loader, aux_loaders, progress_bar)
optimizers = self.estimator.optimizers(lr=lr, eps=eps)
self._step = 0
self._epoch = 1 # start from 1 for logging convenience
while self._epoch <= max_epochs and not self._converged(
while self._epoch < max_epochs and not self._converged(
self._epoch, stop_after_epochs
):
self._epoch += 1
train_frac = f"{self._epoch}/{max_epochs}"
stag_frac = f"{self._stagnant_epochs}/{stop_after_epochs}"
print(f"Training epoch {train_frac}...")
print(f"Stagnant epochs {stag_frac}...")
#print(f"Training epoch {train_frac}...")
#print(f"Stagnant epochs {stag_frac}...")
epoch_start_time = time.time()
self._train_epoch(
train_loader,
batch_estimator_map,
optimizers,
writer,
max_grad_norm
max_grad_norm,
progress_bar=progress_bar
)
epoch_end_time = time.time() - epoch_start_time
self._log_event("train", "epoch_duration", epoch_end_time)
if val_frac > 0:
self._val_epoch(
val_loader,
batch_estimator_map,
optimizers,
writer,
)
self._add_summary_item(
"epoch_time_sec",
time.time() - epoch_start_time
train_loss, val_loss, *_ = self._eval_loaders(
train_loader, val_loader, aux_loaders, progress_bar
)
# determine loss to use for measuring convergence
conv_loss = val_loss if val_loss else train_loss
self._conv_loss = sum(conv_loss) / len(conv_loss)
if self._epoch % summarize_every == 0:
self._summarize(writer, self._epoch)
# save checkpoint
self._summarize()
if self._epoch % chkpt_every == 0:
self.save_model(self._epoch, self.chkpt_dir, dir_prefix)
self._epoch += 1
self.save_model()
return self.estimator
def _converged(self, epoch: int, stop_after_epochs: int) -> bool:
converged = False
if epoch == 1 or self._val_loss < self._best_val_loss:
self._best_val_loss = self._val_loss
if epoch == 0 or self._conv_loss < self._best_val_loss:
self._best_val_loss = self._conv_loss
self._stagnant_epochs = 0
self._best_model_state_dict = deepcopy(self.estimator.state_dict())
else:
@@ -442,94 +511,25 @@ class Trainer[I, K: EstimatorKwargs]:
return converged
@staticmethod
def get_dataloaders(
dataset: BatchedDataset,
batch_size: int,
val_frac: float = 0.1,
train_transform: Transform | None = None,
val_transform: Transform | None = None,
dataset_split_kwargs: SplitKwargs | None = None,
dataset_balance_kwargs: BalanceKwargs | None = None,
dataloader_kwargs: LoaderKwargs | None = None,
) -> tuple[DataLoader, DataLoader]:
def _summarize(self) -> None:
"""
Create training and validation dataloaders for the provided dataset.
Flush the training summary to the TensorBoard summary writer and print
metrics for the current epoch.
"""
if dataset_split_kwargs is None:
dataset_split_kwargs = {}
if dataset_balance_kwargs is not None:
dataset.balance(**dataset_balance_kwargs)
if val_frac <= 0:
dataset.post_transform = train_transform
train_loader_kwargs: LoaderKwargs = {
"batch_size": min(batch_size, len(dataset)),
"num_workers": 0,
"shuffle": True,
}
if dataloader_kwargs is not None:
train_loader_kwargs: LoaderKwargs = {
**train_loader_kwargs,
**dataloader_kwargs
}
return (
DataLoader(dataset, **train_loader_kwargs),
DataLoader(Dataset())
print(f"==== Epoch [{self._epoch}] summary ====")
for (group, name), epoch_map in self._summary.items():
for epoch, values in epoch_map.items():
# compute average over batch items recorded for the epoch
mean = torch.tensor(values).mean().item()
self._writer.add_scalar(f"{group}-{name}", mean, epoch)
if epoch == self._epoch:
print(
f"> ({len(values)}) [{group}] {name} :: {mean:.2f}"
)
train_dataset, val_dataset = dataset.split(
[1 - val_frac, val_frac],
**dataset_split_kwargs,
)
# Dataset.split() returns light Subset objects of shallow copies of the
# underlying dataset; can change the transform attribute of both splits
# w/o overwriting
train_dataset.post_transform = train_transform
val_dataset.post_transform = val_transform
train_loader_kwargs: LoaderKwargs = {
"batch_size": min(batch_size, len(train_dataset)),
"num_workers": 0,
"shuffle": True,
}
val_loader_kwargs: LoaderKwargs = {
"batch_size": min(batch_size, len(val_dataset)),
"num_workers": 0,
"shuffle": True, # shuffle to prevent homogeneous val batches
}
if dataloader_kwargs is not None:
train_loader_kwargs = {**train_loader_kwargs, **dataloader_kwargs}
val_loader_kwargs = {**val_loader_kwargs, **dataloader_kwargs}
train_loader = DataLoader(train_dataset, **train_loader_kwargs)
val_loader = DataLoader(val_dataset, **val_loader_kwargs)
return train_loader, val_loader
def _summarize(self, writer: SummaryWriter, epoch: int) -> None:
"""
Flush the training summary to the TensorBoard summary writer.
"""
summary_values = defaultdict(list)
for name, records in self._summary.items():
for value, step in records:
writer.add_scalar(name, value, step)
summary_values[name].append(value)
print(f"==== Epoch [{epoch}] summary ====")
for name, values in summary_values.items():
mean_value = torch.tensor(values).mean().item()
print(f"> ({len(values)}) {name} :: {mean_value:.2f}")
writer.flush()
self._summary = defaultdict(list)
self._writer.flush()
self._summary = defaultdict(lambda: defaultdict(list))
def _get_optimizer_parameters(
self,
@@ -542,15 +542,13 @@ class Trainer[I, K: EstimatorKwargs]:
if param.grad is not None
]
def _add_summary_item(self, name: str, value: float) -> None:
self._summary[name].append((value, self._step))
def _log_event(self, group: str, name: str, value: float) -> None:
session, epoch = self._session_name, self._epoch
def save_model(
self,
epoch: int,
chkpt_dir: str | Path,
dir_prefix: str,
) -> None:
self._summary[group, name][epoch].append(value)
self._event_log[session][group][name][epoch].append(value)
def save_model(self) -> None:
"""
Save a model checkpoint.
"""
@@ -560,15 +558,15 @@ class Trainer[I, K: EstimatorKwargs]:
model_buff.seek(0)
model_class = self.estimator.__class__.__name__
chkpt_name = f"m_{model_class}-e_{epoch}.pth"
chkpt_name = f"m_{model_class}-e_{self._epoch}.pth"
chkpt_dir = Path(chkpt_dir, dir_prefix)
chkpt_dir = Path(self.chkpt_dir, self._session_name)
chkpt_path = Path(chkpt_dir, chkpt_name)
chkpt_dir.mkdir(parents=True, exist_ok=True)
chkpt_path.write_bytes(model_buff.getvalue())
def load_model(self, epoch: int, chkpt_dir: str) -> None:
def load_model(self, chkpt_dir: str, epoch: int) -> None:
"""
Load a model checkpoint from a given epoch.

View File

@@ -1,6 +1,9 @@
text.usetex : False
mathtext.default : regular
# testing to prevent component overlap/clipping
figure.constrained_layout.use : True
font.family : sans-serif
font.sans-serif : DejaVu Sans
font.serif : DejaVu Serif
@@ -14,7 +17,7 @@ axes.labelsize : 9
xtick.labelsize : 9
ytick.labelsize : 9
#axes.prop_cycle : cycler('color', ['4f7dd5', 'af7031', '55905e', 'd84739', '888348', 'b75e8b', '2f8f99', '9862cb'])
# monobiome -d 0.45 -l 22
axes.prop_cycle : cycler('color', ['5e8de4', 'c38141', '67a771', 'e15344', '9e9858', '41a6b0', 'a46fd7', 'c86d9a'])
image.interpolation : nearest

10
trainlib/utils/map.py Normal file
View File

@@ -0,0 +1,10 @@
from collections import defaultdict
def nested_defaultdict(
depth: int,
final: type = dict,
) -> defaultdict:
if depth == 1:
return defaultdict(final)
return defaultdict(lambda: nested_defaultdict(depth - 1, final))

View File

@@ -3,6 +3,7 @@ import random
import numpy as np
import torch
from torch import Tensor
from torch.utils import _pytree as pytree
def seed_all_backends(seed: int | Tensor | None = None) -> None:
@@ -19,3 +20,9 @@ def seed_all_backends(seed: int | Tensor | None = None) -> None:
torch.cuda.manual_seed(seed)
torch.backends.cudnn.deterministic = True
torch.backends.cudnn.benchmark = False
def ensure_same_device[T](tree: T, device: str) -> T:
return pytree.tree_map(
lambda x: x.to(device) if isinstance(x, torch.Tensor) else x,
tree,
)

View File

@@ -1,8 +1,14 @@
import re
from typing import Any
from colorama import Style
camel2snake_regex: re.Pattern[str] = re.compile(
r"(?<!^)(?=[A-Z][a-z])|(?<=[a-z])(?=[A-Z])"
)
def camel_to_snake(text: str) -> str:
return camel2snake_regex.sub("_", text).lower()
def color_text(text: str, *colorama_args: Any) -> str:
return f"{''.join(colorama_args)}{text}{Style.RESET_ALL}"

View File

@@ -1,14 +1,17 @@
from typing import Any, TypedDict
from collections.abc import Callable, Iterable
from collections.abc import Callable, Iterable, Sequence
import numpy as np
from torch import Tensor
from torch.utils.data.sampler import Sampler
from trainlib.dataset import BatchedDataset
# need b/c matplotlib axes are insanely stupid
type AxesArray = np.ndarray[tuple[int, int], np.dtype[np.object_]]
class LoaderKwargs(TypedDict, total=False):
batch_size: int
batch_size: int | None
shuffle: bool
sampler: Sampler | Iterable | None
batch_sampler: Sampler[list] | Iterable[list] | None
@@ -50,3 +53,17 @@ class OptimizerKwargs(TypedDict, total=False):
capturable: bool
differentiable: bool
fused: bool | None
class SubplotsKwargs(TypedDict, total=False):
sharex: bool | str
sharey: bool | str
squeeze: bool
width_ratios: Sequence[float]
height_ratios: Sequence[float]
subplot_kw: dict[str, Any]
gridspec_kw: dict[str, Any]
figsize: tuple[float, float]
dpi: float
layout: str
constrained_layout: bool

404
uv.lock generated
View File

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