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23 changed files with 1886 additions and 775 deletions

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@@ -1,5 +1,6 @@
# Overview # Overview
Package summary goes here, ideally with a diagram Minimal framework for ML modeling, supporting advanced dataset operations and
streamlined training workflows.
# Install # Install
The `trainlib` package can be installed from PyPI: The `trainlib` package can be installed from PyPI:
@@ -85,7 +86,7 @@ pip install trainlib
class SequenceDataset[I, **P](HomogenousDataset[int, I, I, P]): class SequenceDataset[I, **P](HomogenousDataset[int, I, I, P]):
... ...
class TupleDataset[I](SequenceDataset[tuple[I, ...], ??]): class TupleDataset[I](SequenceDataset[tuple[I, ...], "?"]):
... ...
``` ```

11
TODO.md Normal file
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@@ -0,0 +1,11 @@
# Long-term
- Implement a dataloader in-house, with a clear, lightweight mechanism for
collection-of-structures to structure-of-collections. For multi-proc handling
(happens in torch's dataloader, as well as the BatchedDataset for two
different purposes), we should rely on (a hopefully more stable) `execlib`.
- `Domains` may be externalized (`co3` or `convlib`)
- Up next: CLI, fully JSON-ification of model selection + train.
- Consider a "multi-train" alternative (or arg support in `train()`) for
training many "rollouts" from the same base estimator (basically forks under
different seeds). For architecture benchmarking above all, seeing average
training behavior. Consider corresponding `Plotter` methods (error bars)

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@@ -3,29 +3,64 @@
# For the full list of built-in configuration values, see the documentation: # For the full list of built-in configuration values, see the documentation:
# https://www.sphinx-doc.org/en/master/usage/configuration.html # https://www.sphinx-doc.org/en/master/usage/configuration.html
# -- Styling: type hints ------------------------------------------------------
# There are several possible style combinations for rendering types, none of
# which are optimal in my view. The main switches are:
#
# - Parameter type hints in the signature vs in the separate parameter list
# - Show type hints as plaintext vs rendered HTML elements
#
# The `sphinx_autodoc_typehints` extension enables more context-aware
# rendering, but it's often way too explicit (e.g., unwrapping type variables)
# and makes things difficult to read. It does, however, allow for automatic
# inclusion of default values, which is nice.
#
# I'd like type hints to be rendered in an inline code element, but that
# doesn't happen by default in either case unless you render them in the
# signature. This is sloppy, however, often just a jumbled mess or parameter
# names and types. The current preferred option is to just use the native
# `autodoc` settings for rendering type hints, leaving them out of the
# signature (for easy heading readability). Type hints in the parameter list
# are also as short as possible, not rendered crazily (by default this is in
# italics; not my favorite but it's what we have). No
# `sphinx_autodoc_typehints` needed at this point; you can toggle it if you
# want automatic default values or different formatting for type hints.
# -- Project information ------------------------------------------------------ # -- Project information ------------------------------------------------------
# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information # https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
project = "<package-name>" project = "trainlib"
copyright = "2025, Sam Griesemer" copyright = "2026, Sam Griesemer"
author = "Sam Griesemer" author = "Sam Griesemer"
# -- General configuration ---------------------------------------------------- # -- General configuration ----------------------------------------------------
# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration # https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
extensions = [ extensions = [
"sphinx.ext.autodoc", "sphinx.ext.autodoc",
# enables a directive to be specified manually that gathers module/object # enables a directive to be specified manually that gathers module/object
# summary details in a table # summary details in a table
"sphinx.ext.autosummary", "sphinx.ext.autosummary",
# allow viewing source in the HTML pages # allow viewing source in the HTML pages
"sphinx.ext.viewcode", "sphinx.ext.viewcode",
# only really applies to manual docs; docstrings still need RST-like # only really applies to manual docs; docstrings still need RST-like
"myst_parser", "myst_parser",
# enables Google-style docstring formats # enables Google-style docstring formats
"sphinx.ext.napoleon", "sphinx.ext.napoleon",
# external extension that allows arg types to be inferred by type hints
"sphinx_autodoc_typehints", # external extension that allows arg types to be inferred by type hints;
# without this, type hints show up inside method signatures as plaintext,
# but when enabled they are pulled into the parameter/description block and
# rendered as native nested markup. What's best for a given package may
# vary.
# "sphinx_autodoc_typehints",
] ]
autosummary_generate = True autosummary_generate = True
autosummary_imported_members = True autosummary_imported_members = True
@@ -39,11 +74,39 @@ templates_path = ["_templates"]
exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"] exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]
# -- Options for autodoc ------------------------------------------------------
# class signatures show up only in __init__ rather than at the class header;
# generally cleaner, avoids redundancy
autodoc_class_signature = "separated"
# if `sphinx_autodoc_typehints` extension is enabled, this is redundant: type
# hints are rendered natively and already show up in the parameter block. If
# it's disabled, this setting will do the same job of moving the types to the
# parameter block, but it renders them in plaintext (with links to in-package
# type refs).
autodoc_typehints = "description" # "signature"
autodoc_typehints_format = "short"
autodoc_preserve_defaults = True
autodoc_use_type_comments = False
python_use_unqualified_type_names = True
# push parameters to their own lines in the signature block
# python_maximum_signature_line_length = 60
# -- Options for autodoc_typehints --------------------------------------------
# always_use_bars_union = True # always on for Python 3.14+
# typehints_defaults = "braces-after" # render defaults in param block
# typehints_use_signature = False # False is default; enable if wanted in sig
# always_document_param_types = True # show types even when not in docstring
# -- Options for HTML output -------------------------------------------------- # -- Options for HTML output --------------------------------------------------
# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output # https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output
html_theme = "furo" html_theme = "furo" # "pydata_sphinx_theme"
html_static_path = ["_static"] html_static_path = ["_static"]
# html_sidebars = { # html_sidebars = {
# '**': ['/modules.html'], # '**': ['/modules.html'],
# } # }

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@@ -1,29 +1,37 @@
# `<project-name>` package docs # `trainlib` package docs
{ref}`genindex` {ref}`genindex`
{ref}`modindex` {ref}`modindex`
{ref}`search`
```{eval-rst} ```{eval-rst}
.. autosummary:: .. autosummary::
:nosignatures: :nosignatures:
:recursive:
:caption: Modules
# list modules here for quick links trainlib.dataset
trainlib.domain
trainlib.estimator
trainlib.trainer
trainlib.transform
``` ```
```{toctree} ```{toctree}
:maxdepth: 3 :maxdepth: 3
:caption: Autoref :caption: Autoref
:hidden:
_autoref/<project-name>.rst _autoref/trainlib.rst
``` ```
```{toctree} ```{toctree}
:maxdepth: 3 :maxdepth: 3
:caption: Contents :caption: Contents
:hidden:
reference/documentation/index reference/documentation/index
reference/site/index
``` ```
```{include} ../README.md ```{include} ../README.md
:heading-offset: 1
``` ```

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@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
[project] [project]
name = "trainlib" name = "trainlib"
version = "0.1.1" version = "0.2.0"
description = "Minimal framework for ML modeling. Supports advanced dataset operations and streamlined training." description = "Minimal framework for ML modeling. Supports advanced dataset operations and streamlined training."
requires-python = ">=3.13" requires-python = ">=3.13"
authors = [ authors = [
@@ -24,12 +24,13 @@ classifiers = [
"Intended Audience :: End Users/Desktop", "Intended Audience :: End Users/Desktop",
] ]
dependencies = [ dependencies = [
"torch",
"colorama>=0.4.6", "colorama>=0.4.6",
"matplotlib>=3.10.8", "matplotlib>=3.10.8",
"numpy>=2.4.1", "numpy>=2.4.1",
"tensorboard>=2.20.0", "tensorboard>=2.20.0",
"torch>=2.5.1",
"tqdm>=4.67.1", "tqdm>=4.67.1",
"setuptools<=81.0.0", # here currently b/c tensorboard breaks @ v82.0.0
] ]
[project.scripts] [project.scripts]
@@ -41,6 +42,7 @@ dev = [
] ]
doc = [ doc = [
"furo", "furo",
# "pydata-sphinx-theme",
"myst-parser", "myst-parser",
"sphinx", "sphinx",
"sphinx-togglebutton", "sphinx-togglebutton",
@@ -82,3 +84,11 @@ force-sort-within-sections = false
quote-style = "double" quote-style = "double"
indent-style = "space" indent-style = "space"
docstring-code-format = true docstring-code-format = true
[tool.uv.sources]
torch = { index = "pytorch" }
[[tool.uv.index]]
name = "pytorch"
url = "https://download.pytorch.org/whl/cu128"
explicit = true

102
trainlib/dataloader.py Normal file
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@@ -0,0 +1,102 @@
"""
This class took me a long time to really settle into. It's a connector, and it
feels redundant in many ways, so I've nearly deleted it several times while
talking through the design. But in total, I think it serves a clear purpose.
Reasons:
- Need a typed dataloader, even if I know the type of my attached transform
- Need a new scope that uses the same base dataset without interfering with the
transform attribute; a design that sets or relies on that is subject to
conflict
- Why not just use vanilla DataLoaders?
I'd like to, but the two reasons above make it clear why this is challenging:
I don't get static checks on the structures returned during iteration, and
while you can control ad hoc data transforms via dataset ``post_transforms``,
things can get messy if you need to do that for many transforms using the
same dataset (without copying). Simplest way around this is just a new scope
with the same underlying dataset instance and a transform wrapper around the
iterator; no interference with object attributes.
This is really just meant as the minimum viable logic needed to accomplish the
above - it's a very lightweight wrapper on the base ``DataLoader`` object.
There's an explicit type upper bound ``Kw: EstimatorKwargs``, but it is
otherwise a completely general transform over dataloader batches, highlighting
that it's *mostly* here to place nice with type checks.
"""
from typing import Unpack
from collections.abc import Iterator
from torch.utils.data import DataLoader
from trainlib.dataset import BatchedDataset
from trainlib.estimator import EstimatorKwargs
from trainlib.utils.type import LoaderKwargs
class EstimatorDataLoader[B, Kw: EstimatorKwargs]:
"""
Data loaders for estimators.
This class exists to connect batched data from datasets to the expected
representation for estimator methods. Datasets may be developed
independently from a given model structures, and models should be trainable
under any such data. We need a way to ensure the batched groups of items we
get from dataloaders match on a type level, i.e., can be reshaped into the
expected ``Kw`` signature.
Note: batch structure ``B`` cannot be directly inferred from type variables
exposed by ``BatchedDatasets`` (namely ``R`` and ``I``). What's returned by
a data loader wrapping any such dataset can be arbitrary (depending on the
``collate_fn``), with default behavior being fairly consistent under nested
collections but challenging to accurately type.
.. todo::
To log (have changed for Trainer):
- New compact eval pipeline for train/val/auxiliary dataloaders.
Somewhat annoying logic, but handled consistently
- Convergence tracker will dynamically use training loss (early
stopping) when a validation set isn't provided. Same mechanics for
stagnant epochs (although early stopping is generally a little more
nuanced, having a rate-based stopper, b/c train loss generally quite
monotonic). So that's to be updated, plus room for possible model
selection strategies later.
- Logging happens at each batch, but we append to an epoch-indexed list
and later average. There was a bug in the last round of testing that
I didn't pick up where I was just overwriting summaries using the
last seen batch.
- Reworked general dataset/dataloader handling for main train loop, now
accepting objects of this class to bridge estimator and dataset
communication. This cleans up the batch mapping model.
- TODO: implement a version of this that canonically works with the
device passing plus EstimatorKwargs input; this is the last fuzzy bit
I think.
"""
def __init__(
self,
dataset: BatchedDataset,
**dataloader_kwargs: Unpack[LoaderKwargs],
) -> None:
self._dataloader = DataLoader(dataset, **dataloader_kwargs)
def batch_to_est_kwargs(self, batch_data: B) -> Kw:
"""
.. note::
Even if we have a concrete shape for the output kwarg dict for base
estimators (requiring a tensor "inputs" attribute), we don't
presuppose how a given batch object will map into this dict
structure.
return EstimatorKwargs({"inputs":0})
"""
raise NotImplementedError
def __iter__(self) -> Iterator[Kw]:
return map(self.batch_to_est_kwargs, self._dataloader)

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@@ -1,128 +1,62 @@
""" """
.. admonition:: Marginalizing out the modality layer Domain-generic dataset base with attribute-based splitting and balancing
With ``domain`` being an instance variable, one possible interpretation of **Marginalizing out the modality layer**
the object structures here is that one could completely abstract away
the domain model, defining only item structures and processing data. You
could have a single dataset definition for a particular concrete dataset,
and so long as we're talking about the same items, it can be instantiated
using *any domain*. You wouldn't need specific subclasses for disk or
network or in-memory; you can tell it directly at runtime.
That's an eventually possibility, anyway. As it stands, however, this is With ``domain`` being an instance variable, one possible interpretation of
effectively impossible: the object structures here is that one could completely abstract away
the domain model, defining only item structures and processing data. You
could have a single dataset definition for a particular concrete dataset,
and so long as we're talking about the same items, it can be instantiated
using *any domain*. You wouldn't need specific subclasses for disk or
network or in-memory structures; you can tell it directly at runtime.
You can't easily abstract the batch -> item splitting process, i.e., That's an eventually possibility, anyway. As it stands, however, this is
``_process_batch_data()``. A list-based version of the dataset you're effectively impossible:
trying to define might have an individual item tuple at every index,
whereas a disk-based version might have tuples batched across a few files.
This can't reliably be inferred, nor can it be pushed to the
``Domain``-level without needing equal levels of specialization (you'd just
end up needing the exact same structural distinctions in the ``Domain``
hierarchy). So *somewhere* you need a batch splitting implementation that
is both item structure-dependent *and* domain-dependent...the question is
how dynamic you're willing to be about where it comes from. Right now, we
require this actually be defined in the ``_process_batch_data()`` method,
meaning you'll need a specific ``Dataset`` class for each domain you want
to support (e.g., ``MNISTDisk``, ``MNISTList``, ``MNISTNetwork``, etc), or
at least for each domain where "interpreting" a batch could possibly
differ. This is a case where the interface is all that enforces a
distinction: if you've got two domains that can be counted on to yield
batches in the exact same way and can use the same processing, then you
could feasibly provide ``Domain`` objects from either at runtime and have
no issues. We're "structurally blind" to any differentiation beyond the URI
and resource types by design, so two different domain implementations with
the same type signature ``Domain[U, R]`` should be expected to work fine at
runtime (again, so long as they don't also need different batch
processing), but that's not affording us much flexibility, i.e., most of
the time we'll still be defining new dataset classes for each domain.
I initially flagged this as feasible, however, because one could imagine You can't easily abstract the batch-to-item splitting process, i.e.,
accepting a batch processing method upon instantiation rather than ``_process_batch_data()``. A list-based version of the dataset you're trying to
structurally bolting it into the ``Dataset`` definition. This would require define might have an individual item tuple at every index, whereas a disk-based
knowledge of the item structure ``I`` as well as the ``Domain[U, R]``, so version might have tuples batched across a few files. This can't reliably be
such a function will always have to be (I, U, R)-dependent. It nevertheless inferred, nor can it be pushed to the ``Domain``-level without needing equal
would take out some of the pain of having to define new dataset classes; levels of specialization (you'd just end up needing the exact same structural
instead, you'd just need to define the batch processing method. I see this distinctions in the ``Domain`` hierarchy). So *somewhere* you need a batch
as a worse alternative to just defining *inside* a safe context like a new splitting implementation that is both item structure-dependent *and*
dataset class: you know the types you have to respect, and you stick that domain-dependent...the question is how dynamic you're willing to be about where
method exactly in a context where it's understood. Freeing this up doesn't it comes from. Right now, we require this actually be defined in the
lighten the burden of processing logic, it just changes *when* it has to be ``_process_batch_data()`` method, meaning you'll need a specific ``Dataset``
provided, and that's not worth much (to me) in this case given the bump in class for each domain you want to support (e.g., ``MNISTDisk``, ``MNISTList``,
complexity. (Taking this to the extreme: you could supply *all* of an ``MNISTNetwork``, etc), or at least for each domain where "interpreting" a
object's methods "dynamically" and glue them together at runtime so long as batch could possibly differ. This is a case where the interface is all that
they all played nice. But wherever you were "laying them out" beforehand is enforces a distinction: if you've got two domains that can be counted on to
exactly the job of a class to begin with, so you don't end up with anything yield batches in the exact same way and can use the same processing, then you
more dynamic. All we're really discussing here is pushing around could feasibly provide ``Domain`` objects from either at runtime and have no
unavoidable complexity inside and outside of the "class walls," and in the issues. We're "structurally blind" to any differentiation beyond the URI and
particular case of ``_process_batch_data()``, it feels much better when resource types by design, so two different domain implementations with the same
it's on the inside.) type signature ``Domain[U, R]`` should be expected to work fine at runtime
(again, so long as they don't also need different batch processing), but that's
not affording us much flexibility, i.e., most of the time we'll still be
defining new dataset classes for each domain.
.. admonition:: Holding area I initially flagged this as feasible, however, because one could imagine
accepting a batch processing method upon instantiation rather than structurally
.. code-block:: python bolting it into the ``Dataset`` definition. This would require knowledge of the
item structure ``I`` as well as the ``Domain[U, R]``, so such a function will
@abstractmethod always have to be ``(I, U, R)``-dependent. It nevertheless would take out some
def _get_uri_groups(self) -> Iterable[tuple[U, ...]]: of the pain of having to define new dataset classes; instead, you'd just need
Get URI groups for each batch. to define the batch processing method. I see this as a worse alternative to
just defining *inside* a safe context like a new dataset class: you know the
If there's more than one URI per batch (e.g., a data file and a types you have to respect, and you stick that method exactly in a context where
metadata file), zip the URIs such that we have a tuple of URIs per it's understood. Freeing this up doesn't lighten the burden of processing
batch. logic, it just changes *when* it has to be provided, and that's not worth much
(to me) in this case given the bump in complexity. (Taking this to the extreme:
Note that this effectively defines the index style over batches in you could supply *all* of an object's methods "dynamically" and glue them
the attached domain. We get an ``int -> tuple[U, ...]`` map that together at runtime so long as they all played nice. But wherever you were
turns batch indices into URIs that can be read under the domain. "laying them out" beforehand is exactly the job of a class to begin with, so
``get_batch()`` turns an integer index into its corresponding you don't end up with anything more dynamic. All we're really discussing here
``tuple[U, ...]``, reading the resources with ``_read_resources()`` is pushing around unavoidable complexity inside and outside of the "class
in the tuple, treating them as providers of batched data. walls," and in the particular case of ``_process_batch_data()``, it feels much
``_read_resources()`` passes through to the attached domain logic, better when it's on the inside.)
which, although common, need not supply an explicit iterable of
batch items: we just access items with ``__getitem__()`` and may
ask for ``__len__``. So the returned URI group collection (this
method) does need to be iterable to measure the number of batches,
but the batch objects that are ultimately produced by these URI
groups need not be iterables themselves.
raise NotImplementedError
def _read_resources(
self,
uri_group: tuple[U, ...],
batch_index: int
) -> tuple[R, ...]:
Read batch files at the provided paths.
This method should operate on a single tuple from the list of batch
tuples returned by the ``_get_uri_groups()`` method. That is, it
reads all of the resources for a single batch and returns a tuple
of the same size with their contents.
Note: the dependence on a batch index is mostly here to make
multi-dataset composition easier later. In-dataset, you don't need
to know the batch index to to simply process URIs, but across
datasets you need it to find out the origin of the batch (and
process those URIs accordingly).
return tuple(self.domain.read(uri) for uri in uri_group)
.. code-block:: python
# pulling the type variable out of the inline generic b/c `ty` has
# trouble understanding bound type variables in subclasses
# (specifically with Self@)
T = TypeVar("T", bound=NamedTuple)
class NamedTupleDataset[I](Dataset):
def __init__(self, data_list: list[I]) -> None:
self.data_list = data_list
def __len__(self) -> int:
return len(self.data_list)
def __getitem__(self, index: int) -> I:
return self.data_list[index]
""" """
import math import math
@@ -161,35 +95,69 @@ class BatchedDataset[U, R, I](Dataset):
The class is generic over a URI type ``U``, a resource type ``R`` (both of The class is generic over a URI type ``U``, a resource type ``R`` (both of
which are used to concretize a domain ``Domain[U, R]``), and an item type which are used to concretize a domain ``Domain[U, R]``), and an item type
``T`` (which has a ``tuple`` upper bound). ``I``.
**Batch and item processing flow**
.. admonition:: Pipeline overview .. code-block:: text
.. code-block:: python Domain -> [U] :: self._batch_uris = list(domain)
Domain -> [U] (get _batch_uris) Grab all URIs from Domain iterators. This is made concrete early to
U -> R (domain access ; Rs provide batches) allow for Dataset sizing, and we need a Sequence representation to
R -> [I] (cache here ; _process_batch_data to use load_transform) map integer batch indices into Domains, i.e., when getting the
[I] -> I (human item obj ; _get_item) corresponding URI:
I -> **P (final packed item ; __getitem__ to use transform)
Note^1: as far as positioning, this class is meant to play nice with batch_uri = self._batch_uris[batch_index]
PyTorch DataLoaders, hence the inheritance from ``torch.Dataset``. The
value add for this over the ``torch.Dataset`` base is almost entirely
in the logic it implements to map out of *batched resources* that are
holding data, and flattening it out into typical dataset items. There
are also some QoL items when it comes to splitting and balancing
samples.
Note^2: even though ``Domains`` implement iterators over their URIs, We let Domains implement iterators over their URIs, but explicitly
this doesn't imply a ``BatchedDataset`` is iterable. This just means we exhaust when initializing Datasets.
can walk over the resources that provide data, but we don't necessarily
U -> R :: batch_data = self.domain[batch_uri]
Retrieve resource from domain. Resources are viewed as batched
data, even if only wrapping single items (happens in trivial
settings).
R -> [I] :: self._process_batch_data(batch_data, batch_index)
Possibly domain-specific batch processing of resource data into
explicit Sequence-like structures of items, each of which is
subject to the provided pre_transform. Processed batches at this
stage are cached (if enabled).
[I] -> I :: self.get_batch(batch_index)[index_in_batch]
Select individual items from batches in _get_item. At this stage,
items are in intermediate states and pulled from the cached
batches.
I -> I :: self._process_item_data(item_data, index)
Produce final items with __getitem__, getting intermediate items
via _get_item and applying the provided post_transform.
.. note::
As far as positioning, this class is meant to play nice with PyTorch
DataLoaders, hence the inheritance from ``torch.Dataset``. The value
add for this over the ``torch.Dataset`` base is almost entirely in the
logic it implements to map out of *batched resources* that are holding
data, and flattening it out into typical dataset items. There are also
some QoL features when it comes to splitting and balancing samples.
.. note::
Even though ``Domains`` implement iterators over their URIs, this
doesn't imply a ``BatchedDataset`` is iterable. This just means we can
walk over the resources that provide data, but we don't necessarily
presuppose an ordered walk over samples within batches. Point being: presuppose an ordered walk over samples within batches. Point being:
``torch.Dataset``, not ``torch.IterableDataset``, is the appropriate ``torch.Dataset``, not ``torch.IterableDataset``, is the appropriate
superclass, even when we're working around iterable ``Domains``. superclass, even when we're working around iterable ``Domains``.
Note^3: transforms are expected to operate on ``I``-items and produce .. note::
Transforms are expected to operate on ``I``-items and produce
``I``-items. They shouldn't be the "introducers" of ``I`` types from ``I``-items. They shouldn't be the "introducers" of ``I`` types from
some other intermediate representation, nor should they map from ``I`` some other intermediate representation, nor should they map from ``I``
to something else. Point being: the dataset definition should be able to something else. Point being: the dataset definition should be able
@@ -211,6 +179,7 @@ class BatchedDataset[U, R, I](Dataset):
) -> None: ) -> None:
""" """
Parameters: Parameters:
domain: ``Domain`` object providing access to batched data
pre_transform: transform to apply over items during loading (in pre_transform: transform to apply over items during loading (in
``_process_batch_data()``), i.e., *before* going into ``_process_batch_data()``), i.e., *before* going into
persistent storage persistent storage
@@ -220,6 +189,7 @@ class BatchedDataset[U, R, I](Dataset):
batch_cache_limit: the max number of max batches to cache at any batch_cache_limit: the max number of max batches to cache at any
one time one time
preload: whether to load all data into memory during instantiation preload: whether to load all data into memory during instantiation
num_workers: number of workers to use when preloading data
""" """
self.domain = domain self.domain = domain
@@ -259,6 +229,9 @@ class BatchedDataset[U, R, I](Dataset):
The behavior of this method can vary depending on what we know about The behavior of this method can vary depending on what we know about
batch sizes, and should therefore be implemented by inheriting classes. batch sizes, and should therefore be implemented by inheriting classes.
Parameters:
item_index: index of item
Returns: Returns:
batch_index: int batch_index: int
index_in_batch: int index_in_batch: int
@@ -302,6 +275,10 @@ class BatchedDataset[U, R, I](Dataset):
place to use a provided ``post_transform``; items are pulled from the place to use a provided ``post_transform``; items are pulled from the
cache (if enabled) and processed before being returned as the final cache (if enabled) and processed before being returned as the final
tuple outputs (so this processing is not persistent). tuple outputs (so this processing is not persistent).
Parameters:
item_data: item data
item_index: index of item
""" """
raise NotImplementedError raise NotImplementedError
@@ -317,6 +294,9 @@ class BatchedDataset[U, R, I](Dataset):
Note that return values from `__getitem__()` are "cleaned up" versions Note that return values from `__getitem__()` are "cleaned up" versions
of this representation, with minimal info needed for training. of this representation, with minimal info needed for training.
Parameters:
item_index: index of item
""" """
if item_index >= len(self): if item_index >= len(self):
@@ -351,10 +331,13 @@ class BatchedDataset[U, R, I](Dataset):
they're always connected, and nothing would notice if you waited they're always connected, and nothing would notice if you waited
between steps. The only way this could matter is if you split the between steps. The only way this could matter is if you split the
resource reading and batch processing steps across methods, but when it resource reading and batch processing steps across methods, but when it
actually comes to accessing/caching the batch, you'd have to expand actually comes to accessing/caching the batch, you'd have to expand any
any delayed reads here. There's no way around needing to see all batch delayed reads here. There's no way around needing to see all batch data
data at once here, and we don't want to make that ambiguous: ``list`` at once here, and we don't want to make that ambiguous: ``list`` output
output type it is. type it is.
Parameters:
batch_index: index of batch
""" """
logger.debug("Batch cache miss, reading from root...") logger.debug("Batch cache miss, reading from root...")
@@ -374,6 +357,9 @@ class BatchedDataset[U, R, I](Dataset):
Can be useful when dynamically pulling data (as it's requested) isn't Can be useful when dynamically pulling data (as it's requested) isn't
desired. Requires that `cache_sample_limit=None`, i.e., the cache won't desired. Requires that `cache_sample_limit=None`, i.e., the cache won't
continually remove previous batches as they're loaded. continually remove previous batches as they're loaded.
Parameters:
num_workers: number of parallel workers to use for data loading
""" """
assert self.batch_cache_limit is None, "Preloading under cache limit" assert self.batch_cache_limit is None, "Preloading under cache limit"
@@ -406,36 +392,46 @@ class BatchedDataset[U, R, I](Dataset):
""" """
Split dataset into fractional pieces by data attribute. Split dataset into fractional pieces by data attribute.
If `by_attr` is None, recovers typical fractional splitting of dataset If ``by_attr`` is None, recovers typical fractional splitting of
items, partitioning by size. Using None anywhere will index each item dataset items, partitioning by size. Using None anywhere will index
into its own bucket, i.e., by its index. For instance, each item into its own bucket, i.e., by its index. For instance:
- by_attr=["color"] -> {("red", 1), ("red", 2)}, - Splits on the attribute such that each subset contains entire strata
of the attribute. "Homogeneity within clusters:"
.. code-block::
by_attr=["color"] -> {("red", 1), ("red", 2)},
{("blue", 1), ("blue", 2)} {("blue", 1), ("blue", 2)}
Splits on the attribute such that each subset contains entire strata - Stratifies by attribute and then splits "by index" within, uniformly
of the attribute. "Homogeneity within clusters"
- `by_attr=["color", None]` -> {("red", 1), ("blue", 1)},
{("red", 2), ("blue", 2)}
Stratifies by attribute and then splits "by index" within, uniformly
grabbing samples across strata to form new clusters. "Homogeneity grabbing samples across strata to form new clusters. "Homogeneity
across clusters" across clusters"
.. code-block::
by_attr=["color", None] -> {("red", 1), ("blue", 1)},
{("red", 2), ("blue", 2)}
Note that the final list of Subsets returned are built from shallow Note that the final list of Subsets returned are built from shallow
copies of the underlying dataset (i.e., `self`) to allow manual copies of the underlying dataset (i.e., ``self``) to allow manual
intervention with dataset attributes (e.g., setting the splits to have intervention with dataset attributes (e.g., setting the splits to have
different `transform`s). This is subject to possibly unexpected different ``transforms``). This is subject to possibly unexpected
behavior if re-caching data or you need a true copy of all data in behavior if re-caching data or you need a true copy of all data in
memory, but should otherwise leave most interactions unchanged. memory, but should otherwise leave most interactions unchanged.
Parameters: Parameters:
frac: split fractions for datasets
dataset: dataset to split, defaults to ``self``. Facilitates
recursive splitting when multi-attribute splits are needed.
by_attr: attribute or attributes to use when grouping strata for
dataset splits. Defaults to ``None``, which will use item
indices.
shuffle_strata: shuffle the strata order before split is drawn. We shuffle_strata: shuffle the strata order before split is drawn. We
parameterize this because a dataloader-level shuffle operation parameterize this because a Dataloader-level shuffle operation
will only change the order of the indices in the resulting will only change the order of the indices in the resulting
splits; only a shuffle of items inside the strata can change splits; only a shuffle of the strata order can change the
the actual content of the splits themselves. actual content of the splits themselves.
""" """
if by_attr == []: if by_attr == []:
@@ -544,6 +540,32 @@ class BatchedDataset[U, R, I](Dataset):
split_max_sizes: list[int] | None = None, split_max_sizes: list[int] | None = None,
shuffle_strata: bool = True, shuffle_strata: bool = True,
) -> None: ) -> None:
"""
Balance the distribution of provided attributes over dataset items.
This method sets the indices over the dataset according to the result
of the rebalancing. The indices are produced by the recursive
``_balance()`` method, which is necessarily separate due to the need
for a contained recursive approach that doesn't change the underlying
dataset during execution.
Parameters:
dataset: dataset to split, defaults to ``self``. Facilitates
recursive splitting when multi-attribute splits are needed.
by_attr: attribute or attributes to use when grouping strata for
dataset splits. Defaults to ``None``, which will use item
indices.
split_min_sizes: minimum allowed sizes of splits. Must have the
same length as ``by_attr``.
split_max_sizes: maximum allowed sizes of splits. Must have the
same length as ``by_attr``.
shuffle_strata: shuffle the strata order before split is drawn. We
parameterize this because a Dataloader-level shuffle operation
will only change the order of the indices in the resulting
splits; only a shuffle of the strata order can change the
actual content of the splits themselves.
"""
self.indices = self._balance( self.indices = self._balance(
dataset, dataset,
by_attr, by_attr,
@@ -561,9 +583,29 @@ class BatchedDataset[U, R, I](Dataset):
shuffle_strata: bool = True, shuffle_strata: bool = True,
) -> list[int]: ) -> list[int]:
""" """
Note: behavior is a little odd for nested behavior; not exactly Recursive balancing of items by attribute.
perfectly uniform throughout. This is a little difficult: you can't
exactly know ahead of time the size of the subgroups across splits .. note::
Behavior is a little odd for nested behavior; not exactly perfectly
uniform throughout. This is a little difficult: you can't exactly
know ahead of time the size of the subgroups across splits
Parameters:
dataset: dataset to split, defaults to ``self``. Facilitates
recursive splitting when multi-attribute splits are needed.
by_attr: attribute or attributes to use when grouping strata for
dataset splits. Defaults to ``None``, which will use item
indices.
split_min_sizes: minimum allowed sizes of splits. Must have the
same length as ``by_attr``.
split_max_sizes: maximum allowed sizes of splits. Must have the
same length as ``by_attr``.
shuffle_strata: shuffle the strata order before split is drawn. We
parameterize this because a Dataloader-level shuffle operation
will only change the order of the indices in the resulting
splits; only a shuffle of the strata order can change the
actual content of the splits themselves.
""" """
if by_attr == []: if by_attr == []:
@@ -653,6 +695,9 @@ class BatchedDataset[U, R, I](Dataset):
dataset. The underlying data remain the same, but when indices get set, dataset. The underlying data remain the same, but when indices get set,
you're effectively applying a mask over any existing indices, always you're effectively applying a mask over any existing indices, always
operating *relative* to the existing mask. operating *relative* to the existing mask.
Parameters:
indices: list of indices to set
""" """
# manually set new size # manually set new size
@@ -680,6 +725,13 @@ class BatchedDataset[U, R, I](Dataset):
return self._dataset_len return self._dataset_len
def __getitem__(self, index: int) -> I: def __getitem__(self, index: int) -> I:
"""
Get the dataset item at the specified index.
Parameters:
index: index of item to retrieve
"""
item_data = self._get_item(index) item_data = self._get_item(index)
index = self.indices[index] index = self.indices[index]
@@ -701,9 +753,10 @@ class CompositeBatchedDataset[U, R, I](BatchedDataset[U, R, I]):
""" """
Dataset class for wrapping individual datasets. Dataset class for wrapping individual datasets.
Note: because this remains a valid ``BatchedDataset``, we re-thread the .. note::
generic type variables through the set of composed datasets. That is, they Because this remains a valid ``BatchedDataset``, we re-thread the
must have a common domain type ``Domain[U, R]``. generic type variables through the set of composed datasets. That is,
they must have a common domain type ``Domain[U, R]``.
""" """
def __init__( def __init__(
@@ -888,7 +941,7 @@ class HomogenousDataset[U, R, I](BatchedDataset[U, R, I]):
class HeterogenousDataset[U, R, I](BatchedDataset[U, R, I]): class HeterogenousDataset[U, R, I](BatchedDataset[U, R, I]):
""" """
Batched dataset where batches have arbitrary size. Batched dataset where batches may have arbitrary size.
Methods left for inheriting classes: Methods left for inheriting classes:

View File

@@ -12,7 +12,7 @@ class DiskDataset[T: NamedTuple](HomogenousDataset[Path, bytes, T]):
""" """
The following line is to satisfy the type checker, which The following line is to satisfy the type checker, which
1. Can't recognize an appropriately re-typed constructor arg like 1. Can't recognize an appropriately re-typed constructor arg like::
def __init__( def __init__(
self, self,
@@ -20,7 +20,8 @@ class DiskDataset[T: NamedTuple](HomogenousDataset[Path, bytes, T]):
... ...
): ... ): ...
This *does* match the parent generic for the U=Path, R=bytes context This *does* match the parent generic for the ``U=Path``, ``R=bytes``
context::
def __init__( def __init__(
self, self,
@@ -32,19 +33,17 @@ class DiskDataset[T: NamedTuple](HomogenousDataset[Path, bytes, T]):
2. "Lifted" type variables out of generics can't be used as upper bounds, 2. "Lifted" type variables out of generics can't be used as upper bounds,
at least not without throwing type checker warnings (thanks to PEP695). at least not without throwing type checker warnings (thanks to PEP695).
So I'm not allowed to have So I'm not allowed to have::
```
class BatchedDataset[U, R, D: Domain[U, R]]: class BatchedDataset[U, R, D: Domain[U, R]]:
... ...
```
which could bring appropriately dynamic typing for ``Domain``s, but is which could bring appropriately dynamic typing for ``Domains``, but is
not a sufficiently concrete upper bound. not a sufficiently concrete upper bound.
So: we settle for a class-level type declaration, which despite not being So: we settle for a class-level type declaration, which despite not being
technically appropriately scoped, it's not harming anything and satisfies technically appropriately scoped, it's not harming anything and satisfies
``ty`` type checks downstream (e.g., when we access ``DiskDomain.root``. ``ty`` type checks downstream (e.g., when we access ``DiskDomain.root``).
""" """
domain: DiskDomain domain: DiskDomain

View File

@@ -80,10 +80,10 @@ from trainlib.domain import SequenceDomain
from trainlib.dataset import TupleDataset, DatasetKwargs from trainlib.dataset import TupleDataset, DatasetKwargs
class SlidingWindowDataset[T: Tensor](TupleDataset[T]): class SlidingWindowDataset(TupleDataset[Tensor]):
def __init__( def __init__(
self, self,
domain: SequenceDomain[tuple[T, ...]], domain: SequenceDomain[tuple[Tensor, ...]],
lookback: int, lookback: int,
offset: int = 0, offset: int = 0,
lookahead: int = 1, lookahead: int = 1,
@@ -99,9 +99,9 @@ class SlidingWindowDataset[T: Tensor](TupleDataset[T]):
def _process_batch_data( def _process_batch_data(
self, self,
batch_data: tuple[T, ...], batch_data: tuple[Tensor, ...],
batch_index: int, batch_index: int,
) -> list[tuple[T, ...]]: ) -> list[tuple[Tensor, ...]]:
""" """
Backward pads first sequence over (lookback-1) length, and steps the Backward pads first sequence over (lookback-1) length, and steps the
remaining items forward by the lookahead. remaining items forward by the lookahead.

View File

@@ -1,24 +1,5 @@
""" """
Defines a knowledge domain. Wraps a Dataset / Simulator / Knowledge Generic URI-resource mapping structure
Downstream exploration might include
- Calibrating Simulator / Knowledge with a Dataset
- Amending Dataset with Simulator / Knowledge
- Positioning Knowledge within Simulator context
* Where to replace Simulator subsystem with Knowledge?
Other variations:
- Multi-fidelity simulators
- Multi-scale models
- Multi-system
- Incomplete knowledge / divergence among sources
Questions:
- Should Simulator / Knowledge be unified as one (e.g., "Expert")
""" """
from collections.abc import Mapping, Iterator, Sequence from collections.abc import Mapping, Iterator, Sequence
@@ -83,3 +64,14 @@ class SequenceDomain[R](Domain[int, R]):
def __len__(self) -> int: def __len__(self) -> int:
return len(self.sequence) return len(self.sequence)
class TupleDomain[T](SequenceDomain[tuple[T, ...]]):
"""
Domain for homogenous tuples of the same type.
This class header exists primarily as typed alias that aligns with
TupleDataset.
"""
...

View File

@@ -8,10 +8,16 @@ class SimulatorDomain[P, R](Domain[int, R]):
Base simulator domain, generic to arbitrary callables. Base simulator domain, generic to arbitrary callables.
Note: we don't store simulation results here; that's left to a downstream Note: we don't store simulation results here; that's left to a downstream
object, like a `BatchedDataset`, to cache if needed. We also don't subclass object, like a ``BatchedDataset``, to cache if needed. We also don't
`SequenceDataset` because the item getter type doesn't align: we accept an subclass ``SequenceDataset`` because the item getter type doesn't align: we
`int` in the parameter list, but don't return the items directly from that accept an ``int`` in the parameter list, but don't return the items
collection (we transform them first). directly from that collection (we transform them first).
Note: it's interesting to consider the idea of having parameters directly
act as URIs. There is, however, no obvious way to iterate over allowed
parameters (without additional components, like a prior or some other
generator), so we leave that outside the class scope and simply operate
over of a provided parameter sequence.
""" """
def __init__( def __init__(

View File

@@ -1,4 +1,6 @@
""" """
Base class for trainable models
Development note Development note
I'd rather lay out bare args and kwargs in the estimator methods, but the I'd rather lay out bare args and kwargs in the estimator methods, but the
@@ -162,7 +164,7 @@ class Estimator[Kw: EstimatorKwargs](nn.Module):
self, self,
writer: SummaryWriter, writer: SummaryWriter,
step: int | None = None, step: int | None = None,
val: bool = False, group: str | None = None,
**kwargs: Unpack[Kw], **kwargs: Unpack[Kw],
) -> None: ) -> None:
""" """

148
trainlib/estimators/mlp.py Normal file
View File

@@ -0,0 +1,148 @@
import logging
from typing import Unpack, NotRequired
from collections.abc import Callable, Generator
import torch
import torch.nn.functional as F
from torch import nn, Tensor
from torch.optim import Optimizer
from torch.utils.tensorboard import SummaryWriter
from trainlib.estimator import Estimator, EstimatorKwargs
from trainlib.utils.type import OptimizerKwargs
from trainlib.utils.module import get_grad_norm
from trainlib.estimators.tdnn import TDNNLayer
logger: logging.Logger = logging.getLogger(__name__)
class MLPKwargs(EstimatorKwargs):
inputs: Tensor
labels: NotRequired[Tensor]
class MLP[Kw: MLPKwargs](Estimator[Kw]):
"""
Base MLP architecture.
"""
def __init__(
self,
input_dim: int,
output_dim: int,
hidden_dims: list[int] | None = None,
norm_layer: Callable[..., nn.Module] | None = None,
activation_fn: nn.Module | None = None,
inplace: bool = False,
bias: bool = True,
dropout: float = 0.0,
verbose: bool = True,
) -> None:
"""
Parameters:
input_dim: dimensionality of the input
output_dim: dimensionality of the output
hidden_dims: dimensionalities of hidden layers
"""
super().__init__()
self.input_dim = input_dim
self.output_dim = output_dim
self.hidden_dims = hidden_dims or []
self.norm_layer = norm_layer
self.activation_fn = activation_fn or nn.ReLU
# self._layers: nn.ModuleList = nn.ModuleList()
self._layers = []
layer_in_dim = input_dim
for layer_out_dim in self.hidden_dims:
hidden_layer = nn.Linear(layer_in_dim, layer_out_dim, bias=bias)
self._layers.append(hidden_layer)
if norm_layer is not None:
self._layers.append(norm_layer(layer_out_dim))
self._layers.append(self.activation_fn(inplace=inplace))
self._layers.append(nn.Dropout(dropout, inplace=inplace))
layer_in_dim = layer_out_dim
self._layers.append(nn.Linear(layer_in_dim, self.output_dim))
self._net = nn.Sequential(*self._layers)
if verbose:
self.log_arch()
def _clamp_rand(self, x: Tensor) -> Tensor:
return torch.clamp(
x + (1.0 / 127.0) * (torch.rand_like(x) - 0.5),
min=-1.0,
max=1.0,
)
def forward(self, **kwargs: Unpack[Kw]) -> tuple[Tensor, ...]:
inputs = kwargs["inputs"]
x = self._net(inputs)
return (x,)
def loss(self, **kwargs: Unpack[Kw]) -> Generator[Tensor]:
predictions = self(**kwargs)[0]
labels = kwargs["labels"]
yield F.mse_loss(predictions, labels)
def metrics(self, **kwargs: Unpack[Kw]) -> dict[str, float]:
with torch.no_grad():
loss = next(self.loss(**kwargs)).item()
predictions = self(**kwargs)[0]
labels = kwargs["labels"]
mae = F.l1_loss(predictions, labels).item()
return {
# "mse": loss,
"mae": mae,
"grad_norm": get_grad_norm(self)
}
def optimizers(
self,
**kwargs: Unpack[OptimizerKwargs],
) -> tuple[Optimizer, ...]:
"""
"""
default_kwargs: Unpack[OptimizerKwargs] = {
"lr": 1e-3,
"eps": 1e-8,
}
opt_kwargs = {**default_kwargs, **kwargs}
optimizer = torch.optim.AdamW(
self.parameters(),
**opt_kwargs,
)
return (optimizer,)
def epoch_step(self) -> None:
return None
def epoch_write(
self,
writer: SummaryWriter,
step: int | None = None,
group: str | None = None,
**kwargs: Unpack[Kw],
) -> None:
return None
def log_arch(self) -> None:
super().log_arch()
logger.info(f"| > {self.input_dim=}")
logger.info(f"| > {self.hidden_dims=}")
logger.info(f"| > {self.output_dim=}")

View File

@@ -21,7 +21,7 @@ class RNNKwargs(EstimatorKwargs):
labels: NotRequired[Tensor] labels: NotRequired[Tensor]
class LSTM[K: RNNKwargs](Estimator[K]): class LSTM[Kw: RNNKwargs](Estimator[Kw]):
""" """
Base RNN architecture. Base RNN architecture.
""" """
@@ -85,7 +85,7 @@ class LSTM[K: RNNKwargs](Estimator[K]):
max=1.0, max=1.0,
) )
def forward(self, **kwargs: Unpack[K]) -> tuple[Tensor, ...]: def forward(self, **kwargs: Unpack[Kw]) -> tuple[Tensor, ...]:
inputs = kwargs["inputs"] inputs = kwargs["inputs"]
# data shaped (B, C, T); map to (B, T, C) # data shaped (B, C, T); map to (B, T, C)
@@ -97,18 +97,24 @@ class LSTM[K: RNNKwargs](Estimator[K]):
return z[:, -1, :], hidden return z[:, -1, :], hidden
def loss(self, **kwargs: Unpack[K]) -> Generator[Tensor]: def loss(self, **kwargs: Unpack[Kw]) -> Generator[Tensor]:
predictions = self(**kwargs)[0] predictions = self(**kwargs)[0]
labels = kwargs["labels"] labels = kwargs["labels"]
yield F.mse_loss(predictions, labels) yield F.mse_loss(predictions, labels)
def metrics(self, **kwargs: Unpack[K]) -> dict[str, float]: def metrics(self, **kwargs: Unpack[Kw]) -> dict[str, float]:
with torch.no_grad(): with torch.no_grad():
loss = next(self.loss(**kwargs)).item() loss = next(self.loss(**kwargs)).item()
predictions = self(**kwargs)[0]
labels = kwargs["labels"]
mae = F.l1_loss(predictions, labels).item()
return { return {
"loss": loss, # "loss": loss,
"mse": loss,
"mae": mae,
"grad_norm": get_grad_norm(self) "grad_norm": get_grad_norm(self)
} }
@@ -139,8 +145,8 @@ class LSTM[K: RNNKwargs](Estimator[K]):
self, self,
writer: SummaryWriter, writer: SummaryWriter,
step: int | None = None, step: int | None = None,
val: bool = False, group: str | None = None,
**kwargs: Unpack[K], **kwargs: Unpack[Kw],
) -> None: ) -> None:
return None return None
@@ -159,7 +165,7 @@ class MultiheadLSTMKwargs(EstimatorKwargs):
auxiliary: NotRequired[Tensor] auxiliary: NotRequired[Tensor]
class MultiheadLSTM[K: MultiheadLSTMKwargs](Estimator[K]): class MultiheadLSTM[Kw: MultiheadLSTMKwargs](Estimator[Kw]):
def __init__( def __init__(
self, self,
input_dim: int, input_dim: int,
@@ -217,7 +223,7 @@ class MultiheadLSTM[K: MultiheadLSTMKwargs](Estimator[K]):
max=1.0, max=1.0,
) )
def forward(self, **kwargs: Unpack[K]) -> tuple[Tensor, ...]: def forward(self, **kwargs: Unpack[Kw]) -> tuple[Tensor, ...]:
inputs = kwargs["inputs"] inputs = kwargs["inputs"]
# data shaped (B, C, T); map to (B, T, C) # data shaped (B, C, T); map to (B, T, C)
@@ -231,7 +237,7 @@ class MultiheadLSTM[K: MultiheadLSTMKwargs](Estimator[K]):
return z[:, -1, :], zs[:, -1, :] return z[:, -1, :], zs[:, -1, :]
def loss(self, **kwargs: Unpack[K]) -> Generator[Tensor]: def loss(self, **kwargs: Unpack[Kw]) -> Generator[Tensor]:
pred, pred_aux = self(**kwargs) pred, pred_aux = self(**kwargs)
labels = kwargs["labels"] labels = kwargs["labels"]
aux_labels = kwargs.get("auxiliary") aux_labels = kwargs.get("auxiliary")
@@ -241,12 +247,8 @@ class MultiheadLSTM[K: MultiheadLSTMKwargs](Estimator[K]):
else: else:
yield F.mse_loss(pred, labels) + F.mse_loss(pred_aux, aux_labels) yield F.mse_loss(pred, labels) + F.mse_loss(pred_aux, aux_labels)
def metrics(self, **kwargs: Unpack[K]) -> dict[str, float]: def metrics(self, **kwargs: Unpack[Kw]) -> dict[str, float]:
with torch.no_grad():
loss = next(self.loss(**kwargs)).item()
return { return {
"loss": loss,
"grad_norm": get_grad_norm(self) "grad_norm": get_grad_norm(self)
} }
@@ -277,8 +279,8 @@ class MultiheadLSTM[K: MultiheadLSTMKwargs](Estimator[K]):
self, self,
writer: SummaryWriter, writer: SummaryWriter,
step: int | None = None, step: int | None = None,
val: bool = False, group: str | None = None,
**kwargs: Unpack[K], **kwargs: Unpack[Kw],
) -> None: ) -> None:
return None return None
@@ -291,7 +293,7 @@ class MultiheadLSTM[K: MultiheadLSTMKwargs](Estimator[K]):
logger.info(f"| > {self.output_dim=}") logger.info(f"| > {self.output_dim=}")
class ConvRNN[K: RNNKwargs](Estimator[K]): class ConvGRU[Kw: RNNKwargs](Estimator[Kw]):
""" """
Base recurrent convolutional architecture. Base recurrent convolutional architecture.
@@ -402,7 +404,7 @@ class ConvRNN[K: RNNKwargs](Estimator[K]):
max=1.0, max=1.0,
) )
def forward(self, **kwargs: Unpack[K]) -> tuple[Tensor, ...]: def forward(self, **kwargs: Unpack[Kw]) -> tuple[Tensor, ...]:
inputs = kwargs["inputs"] inputs = kwargs["inputs"]
# embedding shaped (B, C, T) # embedding shaped (B, C, T)
@@ -428,7 +430,7 @@ class ConvRNN[K: RNNKwargs](Estimator[K]):
return (z,) return (z,)
def loss(self, **kwargs: Unpack[K]) -> Generator[Tensor]: def loss(self, **kwargs: Unpack[Kw]) -> Generator[Tensor]:
predictions = self(**kwargs)[0] predictions = self(**kwargs)[0]
labels = kwargs["labels"] labels = kwargs["labels"]
@@ -437,12 +439,17 @@ class ConvRNN[K: RNNKwargs](Estimator[K]):
yield F.mse_loss(predictions, labels, reduction="mean") yield F.mse_loss(predictions, labels, reduction="mean")
def metrics(self, **kwargs: Unpack[K]) -> dict[str, float]: def metrics(self, **kwargs: Unpack[Kw]) -> dict[str, float]:
with torch.no_grad(): with torch.no_grad():
loss = next(self.loss(**kwargs)).item() loss = next(self.loss(**kwargs)).item()
predictions = self(**kwargs)[0].squeeze(-1)
labels = kwargs["labels"]
mae = F.l1_loss(predictions, labels).item()
return { return {
"loss": loss, "mse": loss,
"mae": mae,
"grad_norm": get_grad_norm(self) "grad_norm": get_grad_norm(self)
} }
@@ -473,8 +480,8 @@ class ConvRNN[K: RNNKwargs](Estimator[K]):
self, self,
writer: SummaryWriter, writer: SummaryWriter,
step: int | None = None, step: int | None = None,
val: bool = False, group: str | None = None,
**kwargs: Unpack[K], **kwargs: Unpack[Kw],
) -> None: ) -> None:
return None return None

528
trainlib/plotter.py Normal file
View File

@@ -0,0 +1,528 @@
from typing import Any
from collections.abc import Callable
import numpy as np
import torch
import matplotlib.pyplot as plt
from torch import Tensor
from trainlib.trainer import Trainer
from trainlib.estimator import EstimatorKwargs
from trainlib.dataloader import EstimatorDataLoader
from trainlib.utils.type import AxesArray, SubplotsKwargs
type SubplotFn = Callable[[plt.Axes, int, Tensor, Tensor], None]
type ContextFn = Callable[[plt.Axes, str], None]
class Plotter[Kw: EstimatorKwargs]:
"""
TODOs:
- best fit lines for plots and residuals (compare to ideal lines in each
case)
- show val options across columns; preview how val is changing across
natural training, and what the best will look (so plot like uniform
intervals broken over the training epochs at 0, 50, 100, 150, ... and
highlight the best one, even if that's not actually the single best
epoch)
- Implement data and dimension limits; in the instance dataloaders have
huge numbers of samples or labels are high-dimensional
"""
def __init__(
self,
trainer: Trainer[Any, Kw],
dataloaders: list[EstimatorDataLoader[Any, Kw]],
kw_to_actual: Callable[[Kw], Tensor],
dataloader_labels: list[str] | None = None,
) -> None:
self.trainer = trainer
self.dataloaders = dataloaders
self.dataloader_labels = (
dataloader_labels or list(map(str, range(1, len(dataloaders)+1)))
)
self.kw_to_actual = kw_to_actual
self._outputs: list[list[Tensor]] | None = None
self._metrics: list[list[dict[str, float]]] | None = None
self._data_tuples = None
@property
def data_tuples(self) -> list[tuple[Tensor, Tensor, str]]:
"""
Produce data items; to be cached. Zip later with axes
"""
self.trainer.estimator.eval()
if self._data_tuples is not None:
return self._data_tuples
data_tuples = []
for i, loader in enumerate(self.dataloaders):
label = self.dataloader_labels[i]
actual = torch.cat([
self.kw_to_actual(batch_kwargs).detach().cpu()
for batch_kwargs in loader
])
output = torch.cat([
self.trainer.estimator(**batch_kwargs)[0].detach().cpu()
for batch_kwargs in loader
])
data_tuples.append((actual, output, label))
self._data_tuples = data_tuples
return self._data_tuples
def get_transposed_handles_labels(
self,
ax: plt.Axes
) -> tuple[list, list]:
# transpose legend layout for more natural view
handles, labels = ax.get_legend_handles_labels()
handles = handles[::2] + handles[1::2]
labels = labels[::2] + labels[1::2]
return handles, labels
def _lstsq_dim(
self,
dim_actual: Tensor,
dim_output: Tensor
) -> tuple[Tensor, Tensor]:
A = torch.stack(
[dim_actual, torch.ones_like(dim_actual)],
dim=1
)
m, b = torch.linalg.lstsq(A, dim_output).solution
return m, b
def _prepare_figure_kwargs(
self,
rows: int,
cols: int,
row_size: int | float = 2,
col_size: int | float = 4,
figure_kwargs: SubplotsKwargs | None = None,
) -> SubplotsKwargs:
"""
"""
default_figure_kwargs = {
"sharex": True,
"figsize": (col_size*cols, row_size*rows),
}
figure_kwargs = {
**default_figure_kwargs,
**(figure_kwargs or {}),
}
return figure_kwargs
def _prepare_subplot_kwargs(
self,
subplot_kwargs: dict | None = None,
) -> dict:
"""
"""
default_subplot_kwargs = {}
subplot_kwargs = {
**default_subplot_kwargs,
**(subplot_kwargs or {}),
}
return subplot_kwargs
def _prepare_gof_kwargs(
self,
gof_kwargs: dict | None = None,
) -> dict:
"""
"""
default_gof_kwargs = {
"alpha": 0.5
}
gof_kwargs = {
**default_gof_kwargs,
**(gof_kwargs or {}),
}
return gof_kwargs
def _create_subplots(
self,
rows: int,
cols: int,
row_size: int | float = 2,
col_size: int | float = 4,
figure_kwargs: SubplotsKwargs | None = None,
) -> tuple[plt.Figure, AxesArray]:
"""
"""
figure_kwargs: SubplotsKwargs = self._prepare_figure_kwargs(
rows,
cols,
row_size=row_size,
col_size=col_size,
figure_kwargs=figure_kwargs,
)
fig, axes = plt.subplots(
rows,
cols,
squeeze=False,
**figure_kwargs,
) # ty:ignore[no-matching-overload]
return fig, axes
def _plot_base(
self,
subplot_fn: SubplotFn,
context_fn: ContextFn,
row_size: int | float = 2,
col_size: int | float = 4,
norm_samples: bool = False,
combine_dims: bool = True,
figure_kwargs: SubplotsKwargs | None = None,
) -> tuple[plt.Figure, AxesArray]:
"""
Note: transform samples in dataloader definitions beforehand if you
want to change data
.. todo::
Merge in logic from general diagnostics, allowing collapse from
either dim and transposing.
Later: multi-trial error bars, or at least the ability to pass that
downstream
Parameters:
row_size:
col_size:
figure_kwargs:
subplot_kwargs:
gof_kwargs:
"""
ndims = self.data_tuples[0][0].size(-1)
fig, axes = self._create_subplots(
rows=len(self.dataloaders),
cols=1 if (norm_samples or combine_dims) else ndims,
row_size=row_size,
col_size=col_size,
figure_kwargs=figure_kwargs,
)
for axes_row, data_tuple in zip(axes, self.data_tuples, strict=True):
actual, output, loader_label = data_tuple
if norm_samples:
actual = actual.norm(dim=1, keepdim=True)
output = output.norm(dim=1, keepdim=True)
for dim in range(ndims):
ax = axes_row[0 if combine_dims else dim]
subplot_fn(ax, dim, actual, output)
add_plot_context = (
norm_samples # dim=0 implicit b/c we break
or not combine_dims # add to every subplot across grid
or combine_dims and dim == ndims-1 # wait for last dim
)
# always exec plot logic if not combining, o/w exec just once
if add_plot_context:
context_fn(ax, loader_label)
# transpose legend layout for more natural view
if norm_samples or not combine_dims:
ax.legend()
else:
handles, labels = self.get_transposed_handles_labels(ax)
ax.legend(handles, labels, ncols=2)
# break dimension loop if collapsed by norm
if norm_samples:
break
return fig, axes
# def plot_ordered(...): ...
# """
# Simple ordered view of output dimensions, with actual and output
# overlaid.
# """
def plot_actual_output(
self,
row_size: int | float = 2,
col_size: int | float = 4,
norm_samples: bool = False,
combine_dims: bool = True,
figure_kwargs: SubplotsKwargs | None = None,
subplot_kwargs: dict | None = None,
gof_kwargs: dict | None = None,
) -> tuple[plt.Figure, AxesArray]:
"""
Plot residual distribution.
"""
subplot_kwargs = self._prepare_subplot_kwargs(subplot_kwargs)
gof_kwargs = self._prepare_gof_kwargs(gof_kwargs)
colors = plt.rcParams["axes.prop_cycle"].by_key()["color"]
def subplot_fn(
ax: plt.Axes, dim: int, actual: Tensor, output: Tensor
) -> None:
dim_color = colors[dim % len(colors)]
group_name = "norm" if norm_samples else f"$d_{dim}$"
dim_actual = actual[:, dim]
dim_output = output[:, dim]
ax.scatter(
dim_actual, dim_output,
color=dim_color,
label=group_name,
**subplot_kwargs,
)
# plot goodness of fit line
m, b = self._lstsq_dim(dim_actual, dim_output)
ax.plot(
dim_actual, m * dim_actual + b,
color=dim_color,
label=f"GoF {group_name}",
**gof_kwargs,
)
def context_fn(ax: plt.Axes, loader_label: str) -> None:
# plot perfect prediction reference line, y=x
ax.plot(
[0, 1], [0, 1],
transform=ax.transAxes,
c="black",
alpha=0.2,
)
ax.set_title(
f"[{loader_label}] True labels vs Predictions"
)
ax.set_xlabel("actual")
ax.set_ylabel("output")
return self._plot_base(
subplot_fn, context_fn,
row_size=row_size,
col_size=col_size,
norm_samples=norm_samples,
combine_dims=combine_dims,
figure_kwargs=figure_kwargs,
)
def plot_actual_output_residual(
self,
row_size: int | float = 2,
col_size: int | float = 4,
order_residuals: bool = False,
norm_samples: bool = False,
combine_dims: bool = True,
figure_kwargs: SubplotsKwargs | None = None,
subplot_kwargs: dict | None = None,
gof_kwargs: dict | None = None,
) -> tuple[plt.Figure, AxesArray]:
"""
Plot prediction residuals.
"""
subplot_kwargs = self._prepare_subplot_kwargs(subplot_kwargs)
gof_kwargs = self._prepare_gof_kwargs(gof_kwargs)
colors = plt.rcParams["axes.prop_cycle"].by_key()["color"]
def subplot_fn(
ax: plt.Axes, dim: int, actual: Tensor, output: Tensor
) -> None:
dim_color = colors[dim % len(colors)]
group_name = "norm" if norm_samples else f"$d_{dim}$"
dim_actual = actual[:, dim]
dim_output = output[:, dim]
residuals = dim_actual - dim_output
X, Y = dim_actual, residuals
if order_residuals:
X = range(1, residuals.size(0)+1)
Y = residuals[residuals.argsort()]
ax.scatter(
X, Y,
color=dim_color,
label=group_name,
**subplot_kwargs,
)
# plot goodness of fit line
if not order_residuals:
m, b = self._lstsq_dim(dim_actual, residuals)
ax.plot(
dim_actual, m * dim_actual + b,
color=dim_color,
label=f"GoF {group_name}",
**gof_kwargs,
)
def context_fn(ax: plt.Axes, loader_label: str) -> None:
# compare residuals to y=0
ax.axhline(y=0, c="black", alpha=0.2)
ax.set_title(f"[{loader_label}] Prediction residuals")
ax.set_xlabel("actual")
ax.set_ylabel("residual")
return self._plot_base(
subplot_fn, context_fn,
row_size=row_size,
col_size=col_size,
norm_samples=norm_samples,
combine_dims=combine_dims,
figure_kwargs=figure_kwargs,
)
def plot_actual_output_residual_dist(
self,
row_size: int | float = 2,
col_size: int | float = 4,
norm_samples: bool = False,
combine_dims: bool = True,
figure_kwargs: SubplotsKwargs | None = None,
subplot_kwargs: dict | None = None,
gof_kwargs: dict | None = None,
) -> tuple[plt.Figure, AxesArray]:
"""
Plot residual distribution.
"""
subplot_kwargs = self._prepare_subplot_kwargs(subplot_kwargs)
gof_kwargs = self._prepare_gof_kwargs(gof_kwargs)
colors = plt.rcParams["axes.prop_cycle"].by_key()["color"]
def subplot_fn(
ax: plt.Axes, dim: int, actual: Tensor, output: Tensor
) -> None:
dim_color = colors[dim % len(colors)]
group_name = "norm" if norm_samples else f"$d_{dim}$"
dim_actual = actual[:, dim]
dim_output = output[:, dim]
N = dim_actual.size(0)
residuals = dim_actual - dim_output
_, _, patches = ax.hist(
residuals.abs(),
bins=int(np.sqrt(N)),
density=True,
alpha=0.3,
color=dim_color,
label=group_name,
**subplot_kwargs
)
mu = residuals.abs().mean().item()
ax.axvline(mu, linestyle=":", c=dim_color, label=f"$\\mu_{dim}$")
def context_fn(ax: plt.Axes, loader_label: str) -> None:
ax.set_title(f"[{loader_label}] Residual distribution")
ax.set_xlabel("actual")
ax.set_ylabel("residual (density)")
return self._plot_base(
subplot_fn, context_fn,
row_size=row_size,
col_size=col_size,
norm_samples=norm_samples,
combine_dims=combine_dims,
figure_kwargs=figure_kwargs,
)
def estimator_diagnostic(
self,
row_size: int | float = 2,
col_size: int | float = 4,
session_name: str | None = None,
combine_groups: bool = False,
combine_metrics: bool = False,
transpose_layout: bool = False,
figure_kwargs: SubplotsKwargs | None = None,
) -> tuple[plt.Figure, AxesArray]:
session_map = self.trainer._event_log
session_name = session_name or next(iter(session_map))
groups = session_map[session_name]
num_metrics = len(groups[next(iter(groups))])
# colors = plt.rcParams["axes.prop_cycle"].by_key()["color"]
rows = 1 if combine_groups else len(groups)
cols = 1 if combine_metrics else num_metrics
if transpose_layout:
rows, cols = cols, rows
fig, axes = self._create_subplots(
rows=rows,
cols=cols,
row_size=row_size,
col_size=col_size,
figure_kwargs=figure_kwargs,
)
if transpose_layout:
axes = axes.T
for i, group_name in enumerate(groups):
axes_row = axes[0 if combine_groups else i]
group_metrics = groups[group_name]
for j, metric_name in enumerate(group_metrics):
ax = axes_row[0 if combine_metrics else j]
metric_dict = group_metrics[metric_name]
metric_data = np.array([
(k, np.mean(v)) for k, v in metric_dict.items()
])
if combine_groups and combine_metrics:
label = f"{group_name}-{metric_name}"
title_prefix = "all"
elif combine_groups:
label = group_name
title_prefix = metric_name
# elif combine_metrics:
else:
label = metric_name
title_prefix = group_name
# else:
# label = ""
# title_prefix = f"{group_name},{metric_name}"
ax.plot(
metric_data[:, 0],
metric_data[:, 1],
label=label,
# color=colors[j],
)
ax.set_title(f"[{title_prefix}] Metrics over epochs")
ax.set_xlabel("epoch")
ax.set_ylabel("value")
ax.legend()
return fig, axes

View File

@@ -1,50 +1,67 @@
"""
Core interface for training ``Estimators`` with ``Datasets``
.. admonition:: Design of preview ``get_dataloaders()``
Note how much this method is doing, and the positivity in letting that be
more explicit elsewhere. The assignment of transforms to datasets before
wrapping as loaders is chief among these items, alongside the balancing and
splitting; I think those are hamfisted here to make it work with the old
setup, but I generally it's not consistent with the name "get dataloaders"
(i.e., and also balance and split and set transforms)
"""
import os import os
import time import time
import logging import logging
from io import BytesIO from io import BytesIO
from copy import deepcopy from copy import deepcopy
from typing import Any, Self from typing import Any
from pathlib import Path from pathlib import Path
from collections import defaultdict from collections import defaultdict
from collections.abc import Callable
import torch import torch
from tqdm import tqdm from tqdm import tqdm
from torch import cuda, Tensor from torch import cuda, Tensor
from torch.optim import Optimizer from torch.optim import Optimizer
from torch.nn.utils import clip_grad_norm_ from torch.nn.utils import clip_grad_norm_
from torch.utils.data import Dataset, DataLoader
from torch.utils.tensorboard import SummaryWriter from torch.utils.tensorboard import SummaryWriter
from trainlib.dataset import BatchedDataset
from trainlib.estimator import Estimator, EstimatorKwargs from trainlib.estimator import Estimator, EstimatorKwargs
from trainlib.transform import Transform from trainlib.utils.map import nested_defaultdict
from trainlib.utils.type import ( from trainlib.dataloader import EstimatorDataLoader
SplitKwargs,
LoaderKwargs,
BalanceKwargs,
)
from trainlib.utils.module import ModelWrapper from trainlib.utils.module import ModelWrapper
logger: logging.Logger = logging.getLogger(__name__) logger: logging.Logger = logging.getLogger(__name__)
class Trainer[I, K: EstimatorKwargs]: class Trainer[I, Kw: EstimatorKwargs]:
""" """
Training interface for updating ``Estimators`` with ``Datasets``. Training interface for optimizing parameters of ``Estimators`` with
``Datasets``.
This class is generic to a dataset item type ``I`` and an estimator kwarg
type ``Kw``. These are the two primary components ``Trainer`` objects need
to coordinate: they ultimately rely on a provided map to ensure data items
(type ``I``) from a dataset are appropriately routed as inputs to key
estimator methods (like ``forward()`` and ``loss()``), which accept inputs
of type ``Kw``.
""" """
def __init__( def __init__(
self, self,
estimator: Estimator[K], estimator: Estimator[Kw],
device: str | None = None, device: str | None = None,
chkpt_dir: str = "chkpt/", chkpt_dir: str = "chkpt/",
tblog_dir: str = "tblog/", tblog_dir: str = "tblog/",
) -> None: ) -> None:
""" """
Parameters: Parameters:
estimator: `Estimator` model object estimator: ``Estimator`` model object
device: device on which to carry out training device: device on which to carry out training
chkpt_dir: directory to write model checkpoints
tblog_dir: directory to write TensorBoard logs
""" """
self.device: str self.device: str
@@ -79,6 +96,7 @@ class Trainer[I, K: EstimatorKwargs]:
self.estimator = estimator self.estimator = estimator
self.estimator.to(self.device) self.estimator.to(self.device)
self._event_log = nested_defaultdict(4, list)
self.chkpt_dir = Path(chkpt_dir).resolve() self.chkpt_dir = Path(chkpt_dir).resolve()
self.tblog_dir = Path(tblog_dir).resolve() self.tblog_dir = Path(tblog_dir).resolve()
@@ -87,67 +105,42 @@ class Trainer[I, K: EstimatorKwargs]:
def reset(self) -> None: def reset(self) -> None:
""" """
Set base tracking parameters. Set initial tracking parameters for the primary training loop.
""" """
self._step: int = 0
self._epoch: int = 0 self._epoch: int = 0
self._summary: dict[str, list[tuple[float, int]]] = defaultdict(list) self._summary = defaultdict(lambda: defaultdict(list))
self._val_loss = float("inf") self._conv_loss = float("inf")
self._best_val_loss = float("inf") self._best_conv_loss = float("inf")
self._stagnant_epochs = 0 self._stagnant_epochs = 0
self._best_model_state_dict: dict[str, Any] = {} self._best_model_state_dict: dict[str, Any] = {}
def _train_epoch( def _train_epoch(
self, self,
train_loader: DataLoader, loader: EstimatorDataLoader[Any, Kw],
batch_estimator_map: Callable[[I, Self], K],
optimizers: tuple[Optimizer, ...], optimizers: tuple[Optimizer, ...],
writer: SummaryWriter,
max_grad_norm: float | None = None, max_grad_norm: float | None = None,
) -> list[float]: ) -> list[float]:
""" """
Train the estimator for a single epoch. Train the estimator for a single epoch.
""" """
train_loss_sums = [] loss_sums = []
self.estimator.train() self.estimator.train()
with tqdm(train_loader, unit="batch") as train_epoch: with tqdm(loader, unit="batch") as batches:
for i, batch_data in enumerate(train_epoch): for i, batch_kwargs in enumerate(batches):
est_kwargs = batch_estimator_map(batch_data, self) losses = self.estimator.loss(**batch_kwargs)
inputs = est_kwargs["inputs"]
# one-time logging for o_idx, (loss, optimizer) in enumerate(
if self._step == 0: zip(losses, optimizers, strict=True)
writer.add_graph( ):
ModelWrapper(self.estimator), if len(loss_sums) <= o_idx:
est_kwargs loss_sums.append(0.0)
) loss_sums[o_idx] += loss.item()
# once-per-epoch logging
if i == 0:
self.estimator.epoch_write(
writer,
step=self._step,
val=False,
**est_kwargs
)
train_losses = self.estimator.loss(**est_kwargs)
train_loss_items = []
for o_idx, optimizer in enumerate(optimizers):
optimizer.zero_grad() optimizer.zero_grad()
train_loss = next(train_losses) loss.backward()
if len(train_loss_sums) <= o_idx:
train_loss_sums.append(0.0)
train_loss_item = train_loss.item()
train_loss_sums[o_idx] += train_loss_item
train_loss_items.append(train_loss_item)
train_loss.backward()
# clip gradients for optimizer's parameters # clip gradients for optimizer's parameters
if max_grad_norm is not None: if max_grad_norm is not None:
@@ -158,114 +151,174 @@ class Trainer[I, K: EstimatorKwargs]:
optimizer.step() optimizer.step()
self._step += len(inputs) # set loop loss to running average (reducing if multi-loss)
loss_avg = sum(loss_sums) / (len(loss_sums)*(i+1))
for train_loss_item, train_loss_sum in zip( batches.set_postfix(loss=f"{loss_avg:8.2f}")
train_loss_items,
train_loss_sums,
strict=True,
):
train_epoch.set_postfix(loss=f"{train_loss_sum/(i+1):8.2f}")
self._add_summary_item("train_loss", train_loss_item)
estimator_metrics = self.estimator.metrics(**est_kwargs)
for metric_name, metric_value in estimator_metrics.items():
self._add_summary_item(
f"train_{metric_name}",
metric_value
)
# step estimator hyperparam schedules
self.estimator.epoch_step() self.estimator.epoch_step()
for li, train_loss_sum in enumerate(train_loss_sums): return loss_sums
self._add_summary_item(
f"train_loss{li}_epoch", train_loss_sum / len(train_loader)
)
return train_loss_sums def _eval_epoch(
def _val_epoch(
self, self,
val_loader: DataLoader, loader: EstimatorDataLoader[Any, Kw],
batch_estimator_map: Callable[[I, Self], K], label: str
optimizers: tuple[Optimizer, ...],
writer: SummaryWriter,
) -> list[float]: ) -> list[float]:
""" """
Perform and record validation scores for a single epoch. Perform and record validation scores for a single epoch.
.. On summary writers::
See the similarly titled note for ``_train_epoch()`` for general
remarks about optimizers and how we're recording losses/metrics.
The same mostly applies here in the validation setting, but we
crucially aren't stepping forward ``_step`` between batches. This
means that, even though we're writing losses and metrics once for
each val batch, those values are simply piling up under the same
summary item name. This is consistent with how we report training
items: the model isn't changing across val batches, so these don't
get plotted at different step points (which might be interpreted as
performance along model progression when it's actually variation
across batches). Currently, this "piling" means we actually write
batch values to the same event name at the same step rather than
manually averaging beforehand; we defer the handling to TB, and
although that may technically be discouraged, the val plots render
collections effectively as a vertical line between the min and max
value (which I find to be a satisfactory way to view cross-batch
variation during each val epoch).
""" """
val_loss_sums = [] loss_sums = []
self.estimator.eval() self.estimator.eval()
with tqdm(val_loader, unit="batch") as val_epoch: with tqdm(loader, unit="batch") as batches:
for i, batch_data in enumerate(val_epoch): for i, batch_kwargs in enumerate(batches):
est_kwargs = batch_estimator_map(batch_data, self) losses = self.estimator.loss(**batch_kwargs)
# one-time logging
if self._epoch == 0:
self._writer.add_graph(
ModelWrapper(self.estimator), batch_kwargs
)
# once-per-epoch logging # once-per-epoch logging
if i == 0: if i == 0:
self.estimator.epoch_write( self.estimator.epoch_write(
writer, self._writer,
step=self._step, step=self._epoch,
val=True, group=label,
**est_kwargs **batch_kwargs
) )
val_losses = self.estimator.loss(**est_kwargs) loss_items = []
val_loss_items = [] for o_idx, loss in enumerate(losses):
for o_idx in range(len(optimizers)): if len(loss_sums) <= o_idx:
val_loss = next(val_losses) loss_sums.append(0.0)
if len(val_loss_sums) <= o_idx: loss_item = loss.item()
val_loss_sums.append(0.0) loss_sums[o_idx] += loss_item
loss_items.append(loss_item)
val_loss_item = val_loss.item() # set loop loss to running average (reducing if multi-loss)
val_loss_sums[o_idx] += val_loss_item loss_avg = sum(loss_sums) / (len(loss_sums)*(i+1))
val_loss_items.append(val_loss_item) batches.set_postfix(loss=f"{loss_avg:8.2f}")
for val_loss_item, val_loss_sum in zip( # log individual loss terms after each batch
val_loss_items, for o_idx, loss_item in enumerate(loss_items):
val_loss_sums, self._log_event(label, f"loss_{o_idx}", loss_item)
strict=True,
):
val_epoch.set_postfix(loss=f"{val_loss_sum/(i+1):8.2f}")
self._add_summary_item("val_loss", val_loss_item)
estimator_metrics = self.estimator.metrics(**est_kwargs) # log metrics for batch
estimator_metrics = self.estimator.metrics(**batch_kwargs)
for metric_name, metric_value in estimator_metrics.items(): for metric_name, metric_value in estimator_metrics.items():
self._add_summary_item(f"val_{metric_name}", metric_value) self._log_event(label, metric_name, metric_value)
for li, val_loss_sum in enumerate(val_loss_sums): avg_losses = [loss_sum / (i+1) for loss_sum in loss_sums]
self._add_summary_item(
f"val_loss{li}_epoch", val_loss_sum / len(val_loader)
)
# convergence of multiple losses may be ambiguous return avg_losses
self._val_loss = sum(val_loss_sums) / len(val_loader)
return val_loss_sums def _eval_loaders(
self,
train_loader: EstimatorDataLoader[Any, Kw],
val_loader: EstimatorDataLoader[Any, Kw] | None = None,
aux_loaders: list[EstimatorDataLoader[Any, Kw]] | None = None,
) -> tuple[list[float], list[float] | None, *list[float]]:
"""
Evaluate estimator over each provided dataloader.
This streamlines the general train/val/etc evaluation pipeline during
training. This triggers logging of summary items, TensorBoard writes,
etc, and is therefore exclusively intended for use inside the primary
``train()`` loop.
If looking to use this method publicly, you should instead work with
individual dataloaders and call helper methods like
``get_batch_outputs()`` or ``get_batch_metrics()`` while iterating over
batches. This will have no internal side effects and provides much more
information (just aggregated losses are provided here).
.. admonition:: On epoch counting
Epoch counts start at 0 to allow for a sensible place to benchmark
the initial (potentially untrained/pre-trained) model before any
training data is seen. In the train loop, we increment the epoch
immediately, and all logging happens under the epoch value that's
set at the start of the iteration (rather than incrementing at the
end). Before beginning an additional training iteration, the
convergence condition in the ``while`` is effectively checking what
happened during the last epoch (the counter has not yet been
incremented); if no convergence, we begin again. (This is only
being noted because the epoch counting was previously quite
different: indexing started at ``1``, we incremented at the end of
the loop, and we didn't evaluate the model before the loop began.
This affects how we interpret plots and TensorBoard records, for
instance, so it's useful to spell out the approach clearly
somewhere given the many possible design choices here.)
"""
train_loss = self._eval_epoch(train_loader, "train")
val_loss = self._eval_epoch(val_loader, "val") if val_loader else None
aux_loaders = aux_loaders or []
aux_losses = [
self._eval_epoch(aux_loader, f"aux{i}")
for i, aux_loader in enumerate(aux_loaders)
]
return train_loss, val_loss, *aux_losses
def train( def train(
self, self,
dataset: BatchedDataset[..., ..., I], train_loader: EstimatorDataLoader[Any, Kw],
batch_estimator_map: Callable[[I, Self], K], val_loader: EstimatorDataLoader[Any, Kw] | None = None,
aux_loaders: list[EstimatorDataLoader[Any, Kw]] | None = None,
*,
lr: float = 1e-3, lr: float = 1e-3,
eps: float = 1e-8, eps: float = 1e-8,
max_grad_norm: float | None = None, max_grad_norm: float | None = None,
max_epochs: int = 10, max_epochs: int = 10,
stop_after_epochs: int = 5, stop_after_epochs: int = 5,
batch_size: int = 256,
val_frac: float = 0.1,
train_transform: Transform | None = None,
val_transform: Transform | None = None,
dataset_split_kwargs: SplitKwargs | None = None,
dataset_balance_kwargs: BalanceKwargs | None = None,
dataloader_kwargs: LoaderKwargs | None = None,
summarize_every: int = 1, summarize_every: int = 1,
chkpt_every: int = 1, chkpt_every: int = 1,
resume_latest: bool = False, session_name: str | None = None,
summary_writer: SummaryWriter | None = None, summary_writer: SummaryWriter | None = None,
) -> Estimator: ) -> Estimator:
""" """
.. todo::
- consider making the dataloader ``collate_fn`` an explicit
parameter with a type signature that reflects ``B``, connecting
the ``batch_estimator_map`` somewhere. Might also re-type a
``DataLoader`` in-house to allow a generic around ``B``
- Rework the validation specification. Accept something like a
"validate_with" parameter, or perhaps just move entirely to
accepting a dataloader list, label list. You might then also need
a "train_with," and you could set up sensible defaults so you
basically have the same interaction as now. The "problem" is you
always need a train set, and there's some clearly dependent logic
on a val set, but you don't *need* val, so this should be
slightly reworked (and the more general, *probably* the better in
this case, given I want to plug into the Plotter with possibly
several purely eval sets over the model training lifetime).
Note: this method attempts to implement a general scheme for passing Note: this method attempts to implement a general scheme for passing
needed items to the estimator's loss function from the dataloader. The needed items to the estimator's loss function from the dataloader. The
abstract ``Estimator`` base only requires the model output be provided abstract ``Estimator`` base only requires the model output be provided
@@ -276,13 +329,13 @@ class Trainer[I, K: EstimatorKwargs]:
one should take care to synchronize the sample structure with `dataset` one should take care to synchronize the sample structure with `dataset`
to match that expected by ``self.estimator.loss(...)``. to match that expected by ``self.estimator.loss(...)``.
.. admonition:: On batch_estimator_map .. admonition:: On ``batch_estimator_map``
Dataloader collate functions are responsible for mapping a Dataloader collate functions are responsible for mapping a
collection of items into an item of collections, roughly speaking. collection of items into an item of collections, roughly speaking.
If items are tuples of tensors, If items are tuples of tensors,
.. code-block:: .. code-block:: text
[ [
( [1, 1], [1, 1] ), ( [1, 1], [1, 1] ),
@@ -293,7 +346,7 @@ class Trainer[I, K: EstimatorKwargs]:
the collate function maps back into the item skeleton, producing a the collate function maps back into the item skeleton, producing a
single tuple of (stacked) tensors single tuple of (stacked) tensors
.. code-block:: .. code-block:: text
( [[1, 1], ( [[1, 1],
[2, 2], [2, 2],
@@ -303,14 +356,58 @@ class Trainer[I, K: EstimatorKwargs]:
[2, 2], [2, 2],
[3, 3]] ) [3, 3]] )
This function should map from batches (which should be *item This function should map from batches - which *may* be item
shaped*, i.e., have an ``I`` skeleton, even if stacked items may be shaped, i.e., have an ``I`` skeleton, even if stacked items may be
different on the inside) into estimator keyword arguments (type different on the inside - into estimator keyword arguments (type
``K``). ``Kw``). Collation behavior from a DataLoader (which can be
customized) doesn't consistently yield a known type shape, however,
so it's not appropriate to use ``I`` as the callable param type.
.. admonition:: On session management
This method works around an implicit notion of training sessions.
Estimators are set during instantiation and effectively coupled
with ``Trainer`` instances, but datasets can be supplied
dynamically here. One can, for instance, run under one condition
(specific dataset, number of epochs, etc), then resume later under
another. Relevant details persist across calls: the estimator is
still attached, best val scores stowed, current epoch tracked. By
default, new ``session_names`` are always generated, but you can
write to the same TB location if you using the same
``session_name`` across calls; that's about as close to a direct
training resume as you could want.
If restarting training on new datasets, including short
fine-tuning on training-plus-validation data, it's often sensible
to call ``.reset()`` between ``.train()`` calls. While the same
estimator will be used, tracked variables will be wiped; subsequent
model updates take place under a fresh epoch, no val losses, and be
logged under a separate TB session. This is the general approach to
"piecemeal" training, i.e., incremental model updates under varying
conditions (often just data changes).
.. warning::
Validation convergence when there are multiple losses may be
ambiguous. These are cases where certain parameter sets are
optimized independently; the sum over these losses may not reflect
expected or consistent behavior. For instance, we may record a low
cumulative loss early with a small 1st loss and moderate 2nd loss,
while later encountering a moderate 1st lost and small 2nd loss. We
might prefer the latter case, while ``_converged()`` will stick to
the former -- we need to consider possible weighting across losses,
or storing possibly several best models (e.g., for each loss, the
model that scores best, plus the one scoring best cumulatively,
etc).
Parameters: Parameters:
dataset: dataset to train the estimator
batch_estimator_map: function mapping from batch data to expected
estimator kwargs
lr: learning rate (default: 1e-3) lr: learning rate (default: 1e-3)
eps: adam EPS (default: 1e-8) eps: adam EPS (default: 1e-8)
max_grad_norm: upper bound to use when clipping gradients. If left
as ``None``, no gradient clipping is performed.
max_epochs: maximum number of training epochs max_epochs: maximum number of training epochs
stop_after_epochs: number of epochs with stagnant validation losses stop_after_epochs: number of epochs with stagnant validation losses
to allow before early stopping. If training stops earlier, the to allow before early stopping. If training stops earlier, the
@@ -323,93 +420,57 @@ class Trainer[I, K: EstimatorKwargs]:
dataset dataset
val_split_frac: fraction of dataset to use for validation val_split_frac: fraction of dataset to use for validation
chkpt_every: how often model checkpoints should be saved chkpt_every: how often model checkpoints should be saved
resume_latest: resume training from the latest available checkpoint
in the `chkpt_dir`
""" """
logger.info("> Begin train loop:") logger.info("> Begin train loop:")
logger.info(f"| > {lr=}") logger.info(f"| > {lr=}")
logger.info(f"| > {eps=}") logger.info(f"| > {eps=}")
logger.info(f"| > {max_epochs=}") logger.info(f"| > {max_epochs=}")
logger.info(f"| > {batch_size=}")
logger.info(f"| > {val_frac=}")
logger.info(f"| > {chkpt_every=}") logger.info(f"| > {chkpt_every=}")
logger.info(f"| > {resume_latest=}")
logger.info(f"| > with device: {self.device}") logger.info(f"| > with device: {self.device}")
logger.info(f"| > core count: {os.cpu_count()}") logger.info(f"| > core count: {os.cpu_count()}")
writer: SummaryWriter self._session_name = session_name or str(int(time.time()))
dir_prefix = str(int(time.time())) tblog_path = Path(self.tblog_dir, self._session_name)
if summary_writer is None: self._writer = summary_writer or SummaryWriter(f"{tblog_path}")
writer = SummaryWriter(f"{self.tblog_dir}")
else:
writer = summary_writer
train_loader, val_loader = self.get_dataloaders(
dataset,
batch_size,
val_frac=val_frac,
train_transform=train_transform,
val_transform=val_transform,
dataset_split_kwargs=dataset_split_kwargs,
dataset_balance_kwargs=dataset_balance_kwargs,
dataloader_kwargs=dataloader_kwargs,
)
# evaluate model on dataloaders once before training starts
self._eval_loaders(train_loader, val_loader, aux_loaders)
optimizers = self.estimator.optimizers(lr=lr, eps=eps) optimizers = self.estimator.optimizers(lr=lr, eps=eps)
self._step = 0 while self._epoch < max_epochs and not self._converged(
self._epoch = 1 # start from 1 for logging convenience
while self._epoch <= max_epochs and not self._converged(
self._epoch, stop_after_epochs self._epoch, stop_after_epochs
): ):
self._epoch += 1
train_frac = f"{self._epoch}/{max_epochs}" train_frac = f"{self._epoch}/{max_epochs}"
stag_frac = f"{self._stagnant_epochs}/{stop_after_epochs}" stag_frac = f"{self._stagnant_epochs}/{stop_after_epochs}"
print(f"Training epoch {train_frac}...") print(f"Training epoch {train_frac}...")
print(f"Stagnant epochs {stag_frac}...") print(f"Stagnant epochs {stag_frac}...")
epoch_start_time = time.time() epoch_start_time = time.time()
self._train_epoch( self._train_epoch(train_loader, optimizers, max_grad_norm)
train_loader, epoch_end_time = time.time() - epoch_start_time
batch_estimator_map, self._log_event("train", "epoch_duration", epoch_end_time)
optimizers,
writer,
max_grad_norm
)
if val_frac > 0: train_loss, val_loss, _ = self._eval_loaders(
self._val_epoch( train_loader, val_loader, aux_loaders
val_loader,
batch_estimator_map,
optimizers,
writer,
)
self._add_summary_item(
"epoch_time_sec",
time.time() - epoch_start_time
) )
# determine loss to use for measuring convergence
conv_loss = val_loss if val_loss else train_loss
self._conv_loss = sum(conv_loss) / len(conv_loss)
if self._epoch % summarize_every == 0: if self._epoch % summarize_every == 0:
self._summarize(writer, self._epoch) self._summarize()
# save checkpoint
if self._epoch % chkpt_every == 0: if self._epoch % chkpt_every == 0:
self.save_model( self.save_model()
self._epoch,
self.chkpt_dir,
dir_prefix
)
self._epoch += 1
return self.estimator return self.estimator
def _converged(self, epoch: int, stop_after_epochs: int) -> bool: def _converged(self, epoch: int, stop_after_epochs: int) -> bool:
converged = False converged = False
if epoch == 1 or self._val_loss < self._best_val_loss: if epoch == 0 or self._conv_loss < self._best_val_loss:
self._best_val_loss = self._val_loss self._best_val_loss = self._conv_loss
self._stagnant_epochs = 0 self._stagnant_epochs = 0
self._best_model_state_dict = deepcopy(self.estimator.state_dict()) self._best_model_state_dict = deepcopy(self.estimator.state_dict())
else: else:
@@ -421,94 +482,24 @@ class Trainer[I, K: EstimatorKwargs]:
return converged return converged
@staticmethod def _summarize(self) -> None:
def get_dataloaders(
dataset: BatchedDataset,
batch_size: int,
val_frac: float = 0.1,
train_transform: Transform | None = None,
val_transform: Transform | None = None,
dataset_split_kwargs: SplitKwargs | None = None,
dataset_balance_kwargs: BalanceKwargs | None = None,
dataloader_kwargs: LoaderKwargs | None = None,
) -> tuple[DataLoader, DataLoader]:
""" """
Create training and validation dataloaders for the provided dataset. Flush the training summary to the TensorBoard summary writer and print
metrics for the current epoch.
""" """
if dataset_split_kwargs is None: print(f"==== Epoch [{self._epoch}] summary ====")
dataset_split_kwargs = {} for (group, name), epoch_map in self._summary.items():
for epoch, values in epoch_map.items():
if dataset_balance_kwargs is not None: mean = torch.tensor(values).mean().item()
dataset.balance(**dataset_balance_kwargs) self._writer.add_scalar(f"{group}-{name}", mean, epoch)
if epoch == self._epoch:
if val_frac <= 0: print(
dataset.post_transform = train_transform f"> ({len(values)}) [{group}] {name} :: {mean:.2f}"
train_loader_kwargs: LoaderKwargs = {
"batch_size": min(batch_size, len(dataset)),
"num_workers": 0,
"shuffle": True,
}
if dataloader_kwargs is not None:
train_loader_kwargs: LoaderKwargs = {
**train_loader_kwargs,
**dataloader_kwargs
}
return (
DataLoader(dataset, **train_loader_kwargs),
DataLoader(Dataset())
) )
train_dataset, val_dataset = dataset.split( self._writer.flush()
[1 - val_frac, val_frac], self._summary = defaultdict(lambda: defaultdict(list))
**dataset_split_kwargs,
)
# Dataset.split() returns light Subset objects of shallow copies of the
# underlying dataset; can change the transform attribute of both splits
# w/o overwriting
train_dataset.post_transform = train_transform
val_dataset.post_transform = val_transform
train_loader_kwargs: LoaderKwargs = {
"batch_size": min(batch_size, len(train_dataset)),
"num_workers": 0,
"shuffle": True,
}
val_loader_kwargs: LoaderKwargs = {
"batch_size": min(batch_size, len(val_dataset)),
"num_workers": 0,
"shuffle": True, # shuffle to prevent homogeneous val batches
}
if dataloader_kwargs is not None:
train_loader_kwargs = {**train_loader_kwargs, **dataloader_kwargs}
val_loader_kwargs = {**val_loader_kwargs, **dataloader_kwargs}
train_loader = DataLoader(train_dataset, **train_loader_kwargs)
val_loader = DataLoader(val_dataset, **val_loader_kwargs)
return train_loader, val_loader
def _summarize(self, writer: SummaryWriter, epoch: int) -> None:
"""
Flush the training summary to the TB summary writer.
"""
summary_values = defaultdict(list)
for name, records in self._summary.items():
for value, step in records:
writer.add_scalar(name, value, step)
summary_values[name].append(value)
print(f"==== Epoch [{epoch}] summary ====")
for name, values in summary_values.items():
mean_value = torch.tensor(values).mean().item()
print(f"> ({len(values)}) {name} :: {mean_value:.2f}")
writer.flush()
self._summary = defaultdict(list)
def _get_optimizer_parameters( def _get_optimizer_parameters(
self, self,
@@ -521,15 +512,13 @@ class Trainer[I, K: EstimatorKwargs]:
if param.grad is not None if param.grad is not None
] ]
def _add_summary_item(self, name: str, value: float) -> None: def _log_event(self, group: str, name: str, value: float) -> None:
self._summary[name].append((value, self._step)) session, epoch = self._session_name, self._epoch
def save_model( self._summary[group, name][epoch].append(value)
self, self._event_log[session][group][name][epoch].append(value)
epoch: int,
chkpt_dir: str | Path, def save_model(self) -> None:
dir_prefix: str,
) -> None:
""" """
Save a model checkpoint. Save a model checkpoint.
""" """
@@ -539,25 +528,26 @@ class Trainer[I, K: EstimatorKwargs]:
model_buff.seek(0) model_buff.seek(0)
model_class = self.estimator.__class__.__name__ model_class = self.estimator.__class__.__name__
chkpt_name = f"m_{model_class}-e_{epoch}.pth" chkpt_name = f"m_{model_class}-e_{self._epoch}.pth"
chkpt_dir = Path(chkpt_dir, dir_prefix) chkpt_dir = Path(self.chkpt_dir, self._session_name)
chkpt_path = Path(chkpt_dir, chkpt_name) chkpt_path = Path(chkpt_dir, chkpt_name)
chkpt_dir.mkdir(parents=True, exist_ok=True) chkpt_dir.mkdir(parents=True, exist_ok=True)
chkpt_path.write_bytes(model_buff.getvalue()) chkpt_path.write_bytes(model_buff.getvalue())
def load_model( def load_model(self, chkpt_dir: str, epoch: int) -> None:
self,
epoch: int,
chkpt_dir: str,
) -> None:
""" """
Load a model checkpoint from a given epoch. Load a model checkpoint from a given epoch.
Note that this assumes the model was saved via `Trainer.save_model()`, Note that this assumes the model was saved via
and the estimator provided to this `Trainer` instance matches the ``Trainer.save_model()``, and the estimator provided to this
architecture of the checkpoint model being loaded. ``Trainer`` instance matches the architecture of the checkpoint model
being loaded.
Parameters:
epoch: epoch of saved model
chkpt_dir:
""" """
model_class = self.estimator.__class__.__name__ model_class = self.estimator.__class__.__name__

View File

@@ -1,3 +1,7 @@
"""
Transform base for dataset records
"""
class Transform[I]: class Transform[I]:
""" """
Dataset transform base class. Dataset transform base class.
@@ -8,4 +12,14 @@ class Transform[I]:
""" """
def __call__(self, item: I) -> I: def __call__(self, item: I) -> I:
"""
Apply transform to item.
Parameters:
item: item object to transform
Returns:
transformed item (same type ``I`` as input)
"""
raise NotImplementedError raise NotImplementedError

View File

@@ -0,0 +1,49 @@
text.usetex : False
mathtext.default : regular
# testing to prevent component overlap/clipping
figure.constrained_layout.use : True
font.family : sans-serif
font.sans-serif : DejaVu Sans
font.serif : DejaVu Serif
font.cursive : DejaVu Sans
mathtext.fontset : dejavuserif
font.size : 9
figure.titlesize : 9
legend.fontsize : 9
axes.titlesize : 9
axes.labelsize : 9
xtick.labelsize : 9
ytick.labelsize : 9
# monobiome -d 0.45 -l 22
axes.prop_cycle : cycler('color', ['5e8de4', 'c38141', '67a771', 'e15344', '9e9858', '41a6b0', 'a46fd7', 'c86d9a'])
image.interpolation : nearest
image.resample : False
image.composite_image : True
axes.spines.left : True
axes.spines.bottom : True
axes.spines.top : False
axes.spines.right : False
axes.linewidth : 1
xtick.major.width : 1
xtick.minor.width : 1
ytick.major.width : 1
ytick.minor.width : 1
lines.linewidth : 1
lines.markersize : 1
savefig.dpi : 300
savefig.format : svg
savefig.bbox : tight
savefig.pad_inches : 0.1
svg.image_inline : True
svg.fonttype : none
legend.frameon : False

10
trainlib/utils/map.py Normal file
View File

@@ -0,0 +1,10 @@
from collections import defaultdict
def nested_defaultdict(
depth: int,
final: type = dict,
) -> defaultdict:
if depth == 1:
return defaultdict(final)
return defaultdict(lambda: nested_defaultdict(depth - 1, final))

38
trainlib/utils/plot.py Normal file
View File

@@ -0,0 +1,38 @@
from pathlib import Path
import matplotlib as mpl
import matplotlib.pyplot as plt
FILE = Path(__file__).parent.absolute()
class use_style:
def __init__(
self,
style: list[str] | None = None,
**kwargs: str,
) -> None:
super().__init__()
if style is None:
style = [str(Path(FILE, "custom.mplstyle"))]
self.style = style + [kwargs]
self.previous_style = {}
def __enter__(self) -> None:
self.previous_style = mpl.rcParams.copy()
if self.style is not None:
plt.style.use(self.style)
def __exit__(self, *args: str, **kwargs: str) -> None:
mpl.rcParams.update(self.previous_style)
def set_style(
style: list[str] | None = None,
**kwargs: str,
) -> None:
if style is None:
style = [str(Path(FILE, "custom.mplstyle"))]
plt.style.use(style + [kwargs])

21
trainlib/utils/session.py Normal file
View File

@@ -0,0 +1,21 @@
import random
import numpy as np
import torch
from torch import Tensor
def seed_all_backends(seed: int | Tensor | None = None) -> None:
"""Sets all python, numpy and pytorch seeds."""
if seed is None:
seed = int(torch.randint(1000000, size=(1,)))
else:
seed = int(seed)
random.seed(seed)
np.random.seed(seed)
torch.manual_seed(seed)
torch.cuda.manual_seed(seed)
torch.backends.cudnn.deterministic = True
torch.backends.cudnn.benchmark = False

View File

@@ -1,14 +1,17 @@
from typing import Any, TypedDict from typing import Any, TypedDict
from collections.abc import Callable, Iterable from collections.abc import Callable, Iterable, Sequence
import numpy as np
from torch import Tensor from torch import Tensor
from torch.utils.data.sampler import Sampler from torch.utils.data.sampler import Sampler
from trainlib.dataset import BatchedDataset from trainlib.dataset import BatchedDataset
# need b/c matplotlib axes are insanely stupid
type AxesArray = np.ndarray[tuple[int, int], np.dtype[np.object_]]
class LoaderKwargs(TypedDict, total=False): class LoaderKwargs(TypedDict, total=False):
batch_size: int batch_size: int | None
shuffle: bool shuffle: bool
sampler: Sampler | Iterable | None sampler: Sampler | Iterable | None
batch_sampler: Sampler[list] | Iterable[list] | None batch_sampler: Sampler[list] | Iterable[list] | None
@@ -50,3 +53,17 @@ class OptimizerKwargs(TypedDict, total=False):
capturable: bool capturable: bool
differentiable: bool differentiable: bool
fused: bool | None fused: bool | None
class SubplotsKwargs(TypedDict, total=False):
sharex: bool | str
sharey: bool | str
squeeze: bool
width_ratios: Sequence[float]
height_ratios: Sequence[float]
subplot_kw: dict[str, ...]
gridspec_kw: dict[str, ...]
figsize: tuple[float, float]
dpi: float
layout: str
constrained_layout: bool

496
uv.lock generated
View File

@@ -128,43 +128,59 @@ wheels = [
[[package]] [[package]]
name = "charset-normalizer" name = "charset-normalizer"
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